Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC28AQ8IWP9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 PTBP1P-201ENST00000554374 1601 ntBASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 KRT19P1-201ENST00000405746 1186 ntBASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 AP001160.3-201ENST00000601484 763 ntBASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC28AQ8IWP9 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 KRT18P20-201ENST00000548986 1279 ntBASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC28AQ8IWP9 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CCDC28AQ8IWP9 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms