Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 AC009078.2-202ENST00000463353 338 ntBASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 AC090616.6-201ENST00000582640 721 ntBASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 AL031008.1-201ENST00000619963 541 ntBASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 AC083906.6-201ENST00000641366 219 ntBASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 AC034236.2-201ENST00000606662 1610 ntBASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC144BQ3MJ40 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.95
CCDC144BQ3MJ40 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 AP000347.1-202ENST00000435868 847 ntBASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 KRT18P31-201ENST00000506277 1292 ntBASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 IGHV3-41-201ENST00000613121 348 ntBASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CCDC144BQ3MJ40 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 AC104692.2-201ENST00000603054 253 ntBASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC144BQ3MJ40 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 AC073592.3-201ENST00000625118 1834 ntBASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 AC079781.3-201ENST00000449110 356 ntBASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 AC104819.1-201ENST00000504587 486 ntBASIC20.93■□□□□ 0.94
CCDC144BQ3MJ40 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms