Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.28■□□□□ 0.36
VSX2P58304 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.28■□□□□ 0.36
VSX2P58304 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.28■□□□□ 0.36
VSX2P58304 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VSX2P58304 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.28■□□□□ 0.36
VSX2P58304 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.28■□□□□ 0.36
VSX2P58304 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.28■□□□□ 0.36
VSX2P58304 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.28■□□□□ 0.36
VSX2P58304 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VSX2P58304 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.28■□□□□ 0.36
VSX2P58304 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.28■□□□□ 0.36
VSX2P58304 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VSX2P58304 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
VSX2P58304 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.27■□□□□ 0.36
VSX2P58304 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VSX2P58304 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.27■□□□□ 0.36
VSX2P58304 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.27■□□□□ 0.36
VSX2P58304 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VSX2P58304 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
VSX2P58304 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VSX2P58304 LINC00265-3P-201ENST00000447588 903 ntBASIC17.27■□□□□ 0.36
VSX2P58304 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.27■□□□□ 0.36
VSX2P58304 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.27■□□□□ 0.36
VSX2P58304 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 TPSP2-201ENST00000561760 610 ntBASIC17.27■□□□□ 0.36
VSX2P58304 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.27■□□□□ 0.36
VSX2P58304 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.27■□□□□ 0.36
VSX2P58304 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
VSX2P58304 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
VSX2P58304 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
VSX2P58304 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VSX2P58304 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.27■□□□□ 0.35
VSX2P58304 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX2P58304 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
VSX2P58304 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX2P58304 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VSX2P58304 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
VSX2P58304 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX2P58304 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX2P58304 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX2P58304 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
VSX2P58304 AC009113.1-201ENST00000570267 2443 ntBASIC17.27■□□□□ 0.35
VSX2P58304 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX2P58304 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
VSX2P58304 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.26■□□□□ 0.35
VSX2P58304 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
VSX2P58304 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.26■□□□□ 0.35
VSX2P58304 AC135776.1-201ENST00000319817 2481 ntBASIC17.26■□□□□ 0.35
VSX2P58304 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 FZD10-202ENST00000539839 3282 ntBASIC17.26■□□□□ 0.35
VSX2P58304 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VSX2P58304 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.26■□□□□ 0.35
VSX2P58304 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.26■□□□□ 0.35
VSX2P58304 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.26■□□□□ 0.35
VSX2P58304 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.26■□□□□ 0.35
VSX2P58304 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 TOB2P1-201ENST00000469761 992 ntBASIC17.26■□□□□ 0.35
VSX2P58304 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.26■□□□□ 0.35
VSX2P58304 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.26■□□□□ 0.35
VSX2P58304 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.26■□□□□ 0.35
VSX2P58304 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VSX2P58304 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms