Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH4P55283 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH4P55283 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CDH4P55283 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.43■□□□□ 0.54
CDH4P55283 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.43■□□□□ 0.54
CDH4P55283 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CDH4P55283 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.43■□□□□ 0.54
CDH4P55283 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.43■□□□□ 0.54
CDH4P55283 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CDH4P55283 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.43■□□□□ 0.54
CDH4P55283 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
CDH4P55283 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.43■□□□□ 0.54
CDH4P55283 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
CDH4P55283 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.43■□□□□ 0.54
CDH4P55283 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CDH4P55283 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.43■□□□□ 0.54
CDH4P55283 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CDH4P55283 AC020763.4-201ENST00000623414 4170 ntBASIC18.43■□□□□ 0.54
CDH4P55283 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CDH4P55283 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDH4P55283 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
CDH4P55283 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.42■□□□□ 0.54
CDH4P55283 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CDH4P55283 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.42■□□□□ 0.54
CDH4P55283 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.42■□□□□ 0.54
CDH4P55283 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.42■□□□□ 0.54
CDH4P55283 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.42■□□□□ 0.54
CDH4P55283 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.42■□□□□ 0.54
CDH4P55283 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.42■□□□□ 0.54
CDH4P55283 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.42■□□□□ 0.54
CDH4P55283 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.42■□□□□ 0.54
CDH4P55283 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CDH4P55283 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 NSUN5P1-202ENST00000421140 1535 ntBASIC18.42■□□□□ 0.54
CDH4P55283 NSUN5P2-203ENST00000457352 1529 ntBASIC18.42■□□□□ 0.54
CDH4P55283 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.42■□□□□ 0.54
CDH4P55283 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDH4P55283 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.41■□□□□ 0.54
CDH4P55283 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.41■□□□□ 0.54
CDH4P55283 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CDH4P55283 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CDH4P55283 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CDH4P55283 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CDH4P55283 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.41■□□□□ 0.54
CDH4P55283 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.41■□□□□ 0.54
CDH4P55283 PRELID1P1-202ENST00000567272 903 ntBASIC18.41■□□□□ 0.54
CDH4P55283 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.41■□□□□ 0.54
CDH4P55283 AC005336.2-201ENST00000593183 939 ntBASIC18.41■□□□□ 0.54
CDH4P55283 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.41■□□□□ 0.54
CDH4P55283 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.41■□□□□ 0.54
CDH4P55283 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.41■□□□□ 0.54
CDH4P55283 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CDH4P55283 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDH4P55283 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.41■□□□□ 0.54
CDH4P55283 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH4P55283 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDH4P55283 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.4■□□□□ 0.54
CDH4P55283 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms