Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VCPP55072 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.34■□□□□ 0.69
VCPP55072 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.34■□□□□ 0.69
VCPP55072 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
VCPP55072 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VCPP55072 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
VCPP55072 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.34■□□□□ 0.69
VCPP55072 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.34■□□□□ 0.69
VCPP55072 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.34■□□□□ 0.69
VCPP55072 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.34■□□□□ 0.69
VCPP55072 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VCPP55072 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VCPP55072 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.34■□□□□ 0.69
VCPP55072 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCPP55072 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VCPP55072 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCPP55072 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCPP55072 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCPP55072 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.33■□□□□ 0.69
VCPP55072 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCPP55072 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VCPP55072 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCPP55072 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
VCPP55072 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCPP55072 AC022898.2-201ENST00000616822 1312 ntBASIC19.33■□□□□ 0.69
VCPP55072 AC018470.1-201ENST00000624790 3129 ntBASIC19.33■□□□□ 0.69
VCPP55072 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
VCPP55072 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
VCPP55072 AKR1C7P-201ENST00000305623 895 ntBASIC19.33■□□□□ 0.68
VCPP55072 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
VCPP55072 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.33■□□□□ 0.68
VCPP55072 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
VCPP55072 POLD2P1-201ENST00000511220 997 ntBASIC19.33■□□□□ 0.68
VCPP55072 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.33■□□□□ 0.68
VCPP55072 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.33■□□□□ 0.68
VCPP55072 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.33■□□□□ 0.68
VCPP55072 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.33■□□□□ 0.68
VCPP55072 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
VCPP55072 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.33■□□□□ 0.68
VCPP55072 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
VCPP55072 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
VCPP55072 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCPP55072 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VCPP55072 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VCPP55072 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.32■□□□□ 0.68
VCPP55072 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCPP55072 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
VCPP55072 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCPP55072 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.32■□□□□ 0.68
VCPP55072 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCPP55072 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.32■□□□□ 0.68
VCPP55072 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.32■□□□□ 0.68
VCPP55072 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.32■□□□□ 0.68
VCPP55072 RNA5SP419-201ENST00000515908 135 ntBASIC19.32■□□□□ 0.68
VCPP55072 KRT18P58-201ENST00000527480 1120 ntBASIC19.32■□□□□ 0.68
VCPP55072 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
VCPP55072 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
VCPP55072 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.32■□□□□ 0.68
VCPP55072 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.32■□□□□ 0.68
VCPP55072 AC079602.3-201ENST00000623931 403 ntBASIC19.32■□□□□ 0.68
VCPP55072 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCPP55072 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.32■□□□□ 0.68
VCPP55072 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCPP55072 AL357033.4-201ENST00000617703 1807 ntBASIC19.32■□□□□ 0.68
VCPP55072 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCPP55072 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.31■□□□□ 0.68
VCPP55072 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCPP55072 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCPP55072 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
VCPP55072 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCPP55072 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCPP55072 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.31■□□□□ 0.68
VCPP55072 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCPP55072 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.31■□□□□ 0.68
VCPP55072 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms