Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL4A4P53420 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A4P53420 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
COL4A4P53420 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A4P53420 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A4P53420 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A4P53420 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.21■□□□□ 0.67
COL4A4P53420 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL4A4P53420 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A4P53420 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.21■□□□□ 0.67
COL4A4P53420 NKAPP1-205ENST00000585790 367 ntBASIC19.21■□□□□ 0.67
COL4A4P53420 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A4P53420 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A4P53420 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL4A4P53420 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A4P53420 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL4A4P53420 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A4P53420 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A4P53420 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A4P53420 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A4P53420 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A4P53420 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
COL4A4P53420 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A4P53420 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A4P53420 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A4P53420 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A4P53420 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A4P53420 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
COL4A4P53420 AC126763.1-201ENST00000552015 2118 ntBASIC19.2■□□□□ 0.66
COL4A4P53420 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.2■□□□□ 0.66
COL4A4P53420 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A4P53420 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
COL4A4P53420 MIR1199-201ENST00000621445 119 ntBASIC19.2■□□□□ 0.66
COL4A4P53420 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A4P53420 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A4P53420 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL4A4P53420 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
COL4A4P53420 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A4P53420 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A4P53420 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL4A4P53420 AC073621.1-201ENST00000392730 636 ntBASIC19.2■□□□□ 0.66
COL4A4P53420 MCCD1P2-201ENST00000423228 335 ntBASIC19.2■□□□□ 0.66
COL4A4P53420 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.2■□□□□ 0.66
COL4A4P53420 AC011467.4-201ENST00000594891 528 ntBASIC19.2■□□□□ 0.66
COL4A4P53420 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A4P53420 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A4P53420 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A4P53420 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A4P53420 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.2■□□□□ 0.66
COL4A4P53420 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A4P53420 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A4P53420 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A4P53420 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
COL4A4P53420 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A4P53420 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A4P53420 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A4P53420 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A4P53420 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A4P53420 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A4P53420 MTCL1P1-201ENST00000446207 792 ntBASIC19.19■□□□□ 0.66
COL4A4P53420 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL4A4P53420 AC068472.1-201ENST00000474589 881 ntBASIC19.19■□□□□ 0.66
COL4A4P53420 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A4P53420 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL4A4P53420 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A4P53420 AC009154.2-201ENST00000621177 724 ntBASIC19.19■□□□□ 0.66
COL4A4P53420 AC079776.2-201ENST00000641154 1609 ntBASIC19.19■□□□□ 0.66
COL4A4P53420 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A4P53420 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A4P53420 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A4P53420 WIZP1-201ENST00000531444 2299 ntBASIC19.18■□□□□ 0.66
COL4A4P53420 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A4P53420 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL4A4P53420 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.18■□□□□ 0.66
COL4A4P53420 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.18■□□□□ 0.66
COL4A4P53420 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A4P53420 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.18■□□□□ 0.66
COL4A4P53420 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.18■□□□□ 0.66
COL4A4P53420 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.18■□□□□ 0.66
COL4A4P53420 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A4P53420 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A4P53420 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A4P53420 KRT18P28-201ENST00000453838 1332 ntBASIC19.18■□□□□ 0.66
COL4A4P53420 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A4P53420 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A4P53420 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A4P53420 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A4P53420 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A4P53420 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A4P53420 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A4P53420 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A4P53420 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.17■□□□□ 0.66
COL4A4P53420 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A4P53420 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A4P53420 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A4P53420 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A4P53420 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A4P53420 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A4P53420 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
COL4A4P53420 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms