Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
LIG3P49916 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19■□□□□ 0.63
LIG3P49916 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19■□□□□ 0.63
LIG3P49916 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
LIG3P49916 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19■□□□□ 0.63
LIG3P49916 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
LIG3P49916 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19■□□□□ 0.63
LIG3P49916 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19■□□□□ 0.63
LIG3P49916 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19■□□□□ 0.63
LIG3P49916 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LIG3P49916 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LIG3P49916 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
LIG3P49916 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LIG3P49916 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.99■□□□□ 0.63
LIG3P49916 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 ATP5G1P1-201ENST00000448724 379 ntBASIC18.99■□□□□ 0.63
LIG3P49916 AP003041.3-201ENST00000527151 707 ntBASIC18.99■□□□□ 0.63
LIG3P49916 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LIG3P49916 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
LIG3P49916 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
LIG3P49916 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
LIG3P49916 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.99■□□□□ 0.63
LIG3P49916 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
LIG3P49916 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LIG3P49916 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
LIG3P49916 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LIG3P49916 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.99■□□□□ 0.63
LIG3P49916 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.98■□□□□ 0.63
LIG3P49916 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.98■□□□□ 0.63
LIG3P49916 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.98■□□□□ 0.63
LIG3P49916 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
LIG3P49916 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
LIG3P49916 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG3P49916 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.98■□□□□ 0.63
LIG3P49916 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.98■□□□□ 0.63
LIG3P49916 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG3P49916 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.98■□□□□ 0.63
LIG3P49916 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
LIG3P49916 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.98■□□□□ 0.63
LIG3P49916 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG3P49916 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LIG3P49916 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.98■□□□□ 0.63
LIG3P49916 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.97■□□□□ 0.63
LIG3P49916 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.97■□□□□ 0.63
LIG3P49916 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.97■□□□□ 0.63
LIG3P49916 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.97■□□□□ 0.63
LIG3P49916 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.97■□□□□ 0.63
LIG3P49916 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.97■□□□□ 0.63
LIG3P49916 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
LIG3P49916 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.97■□□□□ 0.63
LIG3P49916 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms