Protein–RNA interactions for Protein: P31276

HOXC13, Homeobox protein Hox-C13, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC13P31276 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXC13P31276 GPR32P1-201ENST00000601788 811 ntBASIC18.67■□□□□ 0.58
HOXC13P31276 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC13P31276 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC13P31276 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HOXC13P31276 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC13P31276 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HOXC13P31276 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HOXC13P31276 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC13P31276 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC13P31276 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
HOXC13P31276 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC13P31276 IL9RP2-201ENST00000423948 1312 ntBASIC18.67■□□□□ 0.58
HOXC13P31276 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC13P31276 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC13P31276 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXC13P31276 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HOXC13P31276 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXC13P31276 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HOXC13P31276 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXC13P31276 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HOXC13P31276 DUTP2-201ENST00000519164 463 ntBASIC18.66■□□□□ 0.58
HOXC13P31276 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.66■□□□□ 0.58
HOXC13P31276 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXC13P31276 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXC13P31276 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXC13P31276 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.66■□□□□ 0.58
HOXC13P31276 REXO1L6P-202ENST00000619970 1078 ntBASIC18.66■□□□□ 0.58
HOXC13P31276 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HOXC13P31276 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXC13P31276 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXC13P31276 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
HOXC13P31276 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HOXC13P31276 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
HOXC13P31276 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXC13P31276 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC13P31276 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXC13P31276 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC13P31276 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
HOXC13P31276 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 AL390961.4-201ENST00000623958 2535 ntBASIC18.65■□□□□ 0.58
HOXC13P31276 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HOXC13P31276 RNF165-205ENST00000588679 2904 ntBASIC18.65■□□□□ 0.58
HOXC13P31276 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXC13P31276 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HOXC13P31276 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HOXC13P31276 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC13P31276 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC13P31276 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.65■□□□□ 0.58
HOXC13P31276 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXC13P31276 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 REXO1L9P-201ENST00000604264 2108 ntBASIC18.65■□□□□ 0.58
HOXC13P31276 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC13P31276 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HOXC13P31276 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC13P31276 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXC13P31276 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXC13P31276 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.58
HOXC13P31276 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HOXC13P31276 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.64■□□□□ 0.58
HOXC13P31276 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HOXC13P31276 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC13P31276 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.64■□□□□ 0.57
HOXC13P31276 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC13P31276 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC13P31276 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXC13P31276 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.64■□□□□ 0.57
HOXC13P31276 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.64■□□□□ 0.57
HOXC13P31276 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.64■□□□□ 0.57
HOXC13P31276 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms