Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 AC012306.2-201ENST00000609350 630 ntBASIC13.79□□□□□ -0.2
HLA-DMBP28068 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 LINC01568-207ENST00000641790 1380 ntBASIC13.79□□□□□ -0.2
HLA-DMBP28068 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC13.79□□□□□ -0.2
HLA-DMBP28068 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HLA-DMBP28068 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 SLC25A6P5-201ENST00000435663 894 ntBASIC13.78□□□□□ -0.2
HLA-DMBP28068 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 PPOX-219ENST00000544598 813 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AL353719.1-201ENST00000566847 864 ntBASIC13.78□□□□□ -0.2
HLA-DMBP28068 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 HLA-DQB1-201ENST00000374943 1656 ntBASIC13.78□□□□□ -0.2
HLA-DMBP28068 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DMBP28068 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HLA-DMBP28068 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DMBP28068 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DMBP28068 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.2
HLA-DMBP28068 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DMBP28068 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DMBP28068 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DMBP28068 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms