Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.09■□□□□ 0.49
SHOX2O60902 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.09■□□□□ 0.49
SHOX2O60902 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SHOX2O60902 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHOX2O60902 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.09■□□□□ 0.49
SHOX2O60902 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
SHOX2O60902 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.09■□□□□ 0.49
SHOX2O60902 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
SHOX2O60902 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SHOX2O60902 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SHOX2O60902 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SHOX2O60902 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SHOX2O60902 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SHOX2O60902 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SHOX2O60902 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.08■□□□□ 0.49
SHOX2O60902 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.08■□□□□ 0.49
SHOX2O60902 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.08■□□□□ 0.48
SHOX2O60902 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SHOX2O60902 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.08■□□□□ 0.48
SHOX2O60902 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.08■□□□□ 0.48
SHOX2O60902 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.08■□□□□ 0.48
SHOX2O60902 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 LYSMD4-203ENST00000378904 2122 ntBASIC18.08■□□□□ 0.48
SHOX2O60902 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SHOX2O60902 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHOX2O60902 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SHOX2O60902 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
SHOX2O60902 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SHOX2O60902 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 KRT8P11-201ENST00000409686 1436 ntBASIC18.07■□□□□ 0.48
SHOX2O60902 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.07■□□□□ 0.48
SHOX2O60902 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
SHOX2O60902 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 SDHAP2-201ENST00000455183 2001 ntBASIC18.07■□□□□ 0.48
SHOX2O60902 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.07■□□□□ 0.48
SHOX2O60902 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SHOX2O60902 LSM12P1-201ENST00000411836 588 ntBASIC18.07■□□□□ 0.48
SHOX2O60902 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SHOX2O60902 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.07■□□□□ 0.48
SHOX2O60902 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
SHOX2O60902 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.07■□□□□ 0.48
SHOX2O60902 AC006557.6-201ENST00000623071 864 ntBASIC18.07■□□□□ 0.48
SHOX2O60902 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SHOX2O60902 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.07■□□□□ 0.48
SHOX2O60902 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SHOX2O60902 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
SHOX2O60902 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.07■□□□□ 0.48
SHOX2O60902 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.07■□□□□ 0.48
SHOX2O60902 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.07■□□□□ 0.48
SHOX2O60902 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHOX2O60902 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHOX2O60902 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SHOX2O60902 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.06■□□□□ 0.48
SHOX2O60902 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHOX2O60902 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHOX2O60902 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHOX2O60902 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHOX2O60902 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.06■□□□□ 0.48
SHOX2O60902 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SHOX2O60902 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SHOX2O60902 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.06■□□□□ 0.48
SHOX2O60902 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHOX2O60902 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHOX2O60902 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHOX2O60902 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.06■□□□□ 0.48
SHOX2O60902 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms