Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
USH1CQ9Y6N9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
USH1CQ9Y6N9 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
USH1CQ9Y6N9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USH1CQ9Y6N9 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 GMCL1P1-201ENST00000463439 1581 ntBASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 NCF1B-203ENST00000435988 1254 ntBASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 KRT18P41-201ENST00000518924 1277 ntBASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 AL137784.2-201ENST00000607332 1000 ntBASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.05■□□□□ 0.48
USH1CQ9Y6N9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 PHGDH-209ENST00000641074 1780 ntBASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
USH1CQ9Y6N9 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USH1CQ9Y6N9 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms