Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CTDP1Q9Y5B0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 MTCL1P1-201ENST00000446207 792 ntBASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 AP002469.2-201ENST00000531724 424 ntBASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 AC114341.1-201ENST00000618070 349 ntBASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 REXO1L6P-202ENST00000619970 1078 ntBASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 LINC01126-201ENST00000623515 1646 ntBASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.89■□□□□ 0.93
CTDP1Q9Y5B0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 AC005082.1-201ENST00000413042 2259 ntBASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 GMCL1P1-201ENST00000463439 1581 ntBASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CTDP1Q9Y5B0 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 AKR1C7P-201ENST00000305623 895 ntBASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 AC064862.7-201ENST00000604520 867 ntBASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CTDP1Q9Y5B0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 AC009533.2-201ENST00000543664 586 ntBASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.86■□□□□ 0.93
CTDP1Q9Y5B0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDP1Q9Y5B0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CTDP1Q9Y5B0 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDP1Q9Y5B0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDP1Q9Y5B0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDP1Q9Y5B0 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDP1Q9Y5B0 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDP1Q9Y5B0 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTDP1Q9Y5B0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms