Protein–RNA interactions for Protein: Q9NYA1

SPHK1, Sphingosine kinase 1, humanhuman

Predictions only

Length 384 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPHK1Q9NYA1 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 AP000867.3-201ENST00000524675 377 ntBASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 AP005901.3-202ENST00000581653 237 ntBASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 BICD1-207ENST00000551848 1962 ntBASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 AC233702.3-201ENST00000578656 1387 ntBASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SPHK1Q9NYA1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SPHK1Q9NYA1 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
SPHK1Q9NYA1 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SPHK1Q9NYA1 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SPHK1Q9NYA1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 CLEC4GP1-201ENST00000596555 870 ntBASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 AC012313.10-201ENST00000623509 926 ntBASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SPHK1Q9NYA1 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 NEFHP1-201ENST00000412845 2629 ntBASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 MTCL1P1-201ENST00000446207 792 ntBASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SPHK1Q9NYA1 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SPHK1Q9NYA1 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms