Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 AC011840.4-201ENST00000578471 627 ntBASIC21.3■■□□□ 1
RNF41Q9H4P4 MIR3180-1-201ENST00000580374 94 ntBASIC21.3■■□□□ 1
RNF41Q9H4P4 MIR3180-3-201ENST00000584616 94 ntBASIC21.3■■□□□ 1
RNF41Q9H4P4 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.3■■□□□ 1
RNF41Q9H4P4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC21.3■■□□□ 1
RNF41Q9H4P4 AL353801.3-201ENST00000609898 542 ntBASIC21.3■■□□□ 1
RNF41Q9H4P4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF41Q9H4P4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF41Q9H4P4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF41Q9H4P4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.3■■□□□ 1
RNF41Q9H4P4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF41Q9H4P4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNF41Q9H4P4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.29■■□□□ 1
RNF41Q9H4P4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.29■■□□□ 1
RNF41Q9H4P4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.29■■□□□ 1
RNF41Q9H4P4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.29■■□□□ 1
RNF41Q9H4P4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.29■■□□□ 1
RNF41Q9H4P4 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.29■■□□□ 1
RNF41Q9H4P4 CIB2-208ENST00000560618 804 ntTSL 2 BASIC21.29■■□□□ 1
RNF41Q9H4P4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC21.29■■□□□ 1
RNF41Q9H4P4 AC092329.2-201ENST00000598402 547 ntBASIC21.29■■□□□ 1
RNF41Q9H4P4 AC092119.3-201ENST00000612618 583 ntBASIC21.29■■□□□ 1
RNF41Q9H4P4 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
RNF41Q9H4P4 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RNF41Q9H4P4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
RNF41Q9H4P4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.29■■□□□ 1
RNF41Q9H4P4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.29■■□□□ 1
RNF41Q9H4P4 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC21.28■■□□□ 1
RNF41Q9H4P4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.28■■□□□ 1
RNF41Q9H4P4 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.28■■□□□ 1
RNF41Q9H4P4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.28■■□□□ 1
RNF41Q9H4P4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.28■■□□□ 1
RNF41Q9H4P4 AC112698.1-201ENST00000510299 916 ntBASIC21.28■■□□□ 1
RNF41Q9H4P4 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.28■■□□□ 1
RNF41Q9H4P4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.28■■□□□ 1
RNF41Q9H4P4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.28■■□□□ 1
RNF41Q9H4P4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.28■■□□□ 1
RNF41Q9H4P4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.28■■□□□ 1
RNF41Q9H4P4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
RNF41Q9H4P4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.28■■□□□ 1
RNF41Q9H4P4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.28■■□□□ 1
RNF41Q9H4P4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
RNF41Q9H4P4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.27■■□□□ 1
RNF41Q9H4P4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.27■■□□□ 1
RNF41Q9H4P4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
RNF41Q9H4P4 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
RNF41Q9H4P4 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
RNF41Q9H4P4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC21.27■■□□□ 1
RNF41Q9H4P4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
RNF41Q9H4P4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC21.27■■□□□ 1
RNF41Q9H4P4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.27■■□□□ 1
RNF41Q9H4P4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.27■■□□□ 1
RNF41Q9H4P4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC21.27■■□□□ 1
RNF41Q9H4P4 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
RNF41Q9H4P4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
RNF41Q9H4P4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
RNF41Q9H4P4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNF41Q9H4P4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RNF41Q9H4P4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
RNF41Q9H4P4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.27■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms