Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 TFAMP1-201ENST00000412727 736 ntBASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 ATP5G2P4-201ENST00000442175 420 ntBASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 ABCD1P5-201ENST00000445663 754 ntBASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CNTNAP3BQ96NU0 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 PARP8-206ENST00000503665 572 ntTSL 4 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 AL139288.1-201ENST00000623748 933 ntBASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 INTS4P1-201ENST00000438455 1935 ntBASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTNAP3BQ96NU0 KRT8P7-201ENST00000533003 1432 ntBASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 AC018445.3-201ENST00000624177 1945 ntBASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 TSPY16P-201ENST00000449843 468 ntBASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 AC073592.5-201ENST00000624854 528 ntBASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 AC005593.1-201ENST00000624894 515 ntBASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 AP000867.4-201ENST00000641616 219 ntBASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 GPR89P-201ENST00000407924 1495 ntBASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.22■□□□□ 0.35
CNTNAP3BQ96NU0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms