Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 AC134684.3-201ENST00000641758 218 ntBASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 LINC01126-201ENST00000623515 1646 ntBASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.22■□□□□ 0.19
SNRNP40Q96DI7 AL161938.1-201ENST00000569833 2180 ntBASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 AC004832.2-201ENST00000426397 482 ntBASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 AC112698.1-201ENST00000510299 916 ntBASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SNRNP40Q96DI7 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SNRNP40Q96DI7 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.21■□□□□ 0.18
SNRNP40Q96DI7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
SNRNP40Q96DI7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SNRNP40Q96DI7 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SNRNP40Q96DI7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 AC002347.1-201ENST00000569543 541 ntBASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 AP000867.4-201ENST00000641616 219 ntBASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SNRNP40Q96DI7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms