Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.54■□□□□ 0.88
ERCC4Q92889 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.54■□□□□ 0.88
ERCC4Q92889 TSPY7P-201ENST00000431358 1114 ntBASIC20.54■□□□□ 0.88
ERCC4Q92889 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.54■□□□□ 0.88
ERCC4Q92889 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.54■□□□□ 0.88
ERCC4Q92889 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC4Q92889 CA15P1-201ENST00000481698 905 ntBASIC20.54■□□□□ 0.88
ERCC4Q92889 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.54■□□□□ 0.88
ERCC4Q92889 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC4Q92889 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.54■□□□□ 0.88
ERCC4Q92889 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC4Q92889 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.54■□□□□ 0.88
ERCC4Q92889 AL023803.3-201ENST00000615559 522 ntBASIC20.54■□□□□ 0.88
ERCC4Q92889 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
ERCC4Q92889 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
ERCC4Q92889 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC4Q92889 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC4Q92889 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC4Q92889 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC4Q92889 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC4Q92889 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ERCC4Q92889 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
ERCC4Q92889 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
ERCC4Q92889 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
ERCC4Q92889 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
ERCC4Q92889 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.53■□□□□ 0.88
ERCC4Q92889 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.53■□□□□ 0.88
ERCC4Q92889 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 CR769767.2-201ENST00000622735 460 ntBASIC20.53■□□□□ 0.88
ERCC4Q92889 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC4Q92889 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
ERCC4Q92889 AC108860.2-201ENST00000562760 2183 ntBASIC20.53■□□□□ 0.88
ERCC4Q92889 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.53■□□□□ 0.88
ERCC4Q92889 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
ERCC4Q92889 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.53■□□□□ 0.88
ERCC4Q92889 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
ERCC4Q92889 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ERCC4Q92889 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
ERCC4Q92889 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
ERCC4Q92889 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.52■□□□□ 0.88
ERCC4Q92889 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
ERCC4Q92889 KRT18P23-201ENST00000435622 1283 ntBASIC20.52■□□□□ 0.88
ERCC4Q92889 SLC25A6P5-201ENST00000435663 894 ntBASIC20.52■□□□□ 0.88
ERCC4Q92889 RBM17P1-201ENST00000453646 1190 ntBASIC20.52■□□□□ 0.88
ERCC4Q92889 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.52■□□□□ 0.88
ERCC4Q92889 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.52■□□□□ 0.88
ERCC4Q92889 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.52■□□□□ 0.88
ERCC4Q92889 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.52■□□□□ 0.88
ERCC4Q92889 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
ERCC4Q92889 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ERCC4Q92889 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
ERCC4Q92889 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ERCC4Q92889 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.51■□□□□ 0.87
ERCC4Q92889 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.51■□□□□ 0.87
ERCC4Q92889 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.51■□□□□ 0.87
ERCC4Q92889 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
ERCC4Q92889 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.51■□□□□ 0.87
ERCC4Q92889 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.51■□□□□ 0.87
ERCC4Q92889 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.51■□□□□ 0.87
ERCC4Q92889 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
ERCC4Q92889 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.51■□□□□ 0.87
ERCC4Q92889 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.51■□□□□ 0.87
ERCC4Q92889 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.51■□□□□ 0.87
ERCC4Q92889 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.51■□□□□ 0.87
ERCC4Q92889 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.51■□□□□ 0.87
ERCC4Q92889 AP000525.1-201ENST00000608286 694 ntBASIC20.51■□□□□ 0.87
ERCC4Q92889 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms