Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CYP2D8P-201ENST00000433633 1490 ntBASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 SLC25A6P5-201ENST00000435663 894 ntBASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.39■□□□□ 0.38
CLHC1Q8NHS4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.39■□□□□ 0.38
CLHC1Q8NHS4 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLHC1Q8NHS4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 AP006294.2-201ENST00000641667 209 ntBASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 KRT17P2-201ENST00000300992 1314 ntBASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 AL024508.2-201ENST00000607749 1894 ntBASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 AC093010.1-201ENST00000473625 1624 ntBASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLHC1Q8NHS4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 AC104390.1-201ENST00000555663 520 ntBASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLHC1Q8NHS4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms