Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 KRT18P28-201ENST00000453838 1332 ntBASIC18.47■□□□□ 0.55
SLC44A3Q8N4M1 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 BX005266.1-201ENST00000473402 457 ntBASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SLC44A3Q8N4M1 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
SLC44A3Q8N4M1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 AP006288.1-201ENST00000446065 395 ntBASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 MIR1199-201ENST00000621445 119 ntBASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 AC079776.2-201ENST00000641154 1609 ntBASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SLC44A3Q8N4M1 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 KRT18P27-201ENST00000427733 1299 ntBASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 AC064836.3-201ENST00000607928 673 ntBASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 AL596442.2-201ENST00000610240 980 ntBASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 AC005593.1-201ENST00000624894 515 ntBASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 AL022326.1-202ENST00000641533 845 ntBASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.44■□□□□ 0.54
SLC44A3Q8N4M1 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SLC44A3Q8N4M1 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms