Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 AC096733.2-201ENST00000609937 1394 ntBASIC13.88□□□□□ -0.19
HIST1H1AQ02539 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 AC012618.2-201ENST00000428058 849 ntBASIC13.88□□□□□ -0.19
HIST1H1AQ02539 PENK-204ENST00000518770 863 ntTSL 2 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 AC113410.3-201ENST00000623366 203 ntBASIC13.88□□□□□ -0.19
HIST1H1AQ02539 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 AL049637.2-201ENST00000641778 930 ntBASIC13.88□□□□□ -0.19
HIST1H1AQ02539 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 GNAS-203ENST00000306120 1878 ntBASIC13.87□□□□□ -0.19
HIST1H1AQ02539 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 TBC1D3P2-202ENST00000577902 1649 ntBASIC13.87□□□□□ -0.19
HIST1H1AQ02539 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 AL023284.2-201ENST00000405850 579 ntBASIC13.87□□□□□ -0.19
HIST1H1AQ02539 FDX2-206ENST00000492239 773 ntTSL 2 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 REXO2-216ENST00000544196 452 ntTSL 3 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 GRAMD4P8-201ENST00000605465 1115 ntBASIC13.87□□□□□ -0.19
HIST1H1AQ02539 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 AC008622.2-201ENST00000617006 1229 ntBASIC13.87□□□□□ -0.19
HIST1H1AQ02539 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 MYLKP1-201ENST00000509077 1580 ntBASIC13.87□□□□□ -0.19
HIST1H1AQ02539 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 MME-217ENST00000616757 1315 ntTSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
HIST1H1AQ02539 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HIST1H1AQ02539 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HIST1H1AQ02539 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13.86□□□□□ -0.19
HIST1H1AQ02539 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIST1H1AQ02539 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIST1H1AQ02539 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIST1H1AQ02539 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HIST1H1AQ02539 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC13.86□□□□□ -0.19
HIST1H1AQ02539 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.86□□□□□ -0.19
HIST1H1AQ02539 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms