Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A4P53420 KRT18P27-201ENST00000427733 1299 ntBASIC19.25■□□□□ 0.67
COL4A4P53420 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
COL4A4P53420 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A4P53420 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.25■□□□□ 0.67
COL4A4P53420 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.25■□□□□ 0.67
COL4A4P53420 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.25■□□□□ 0.67
COL4A4P53420 MYLKP1-201ENST00000509077 1580 ntBASIC19.25■□□□□ 0.67
COL4A4P53420 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL4A4P53420 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 AC125634.1-201ENST00000438758 1403 ntBASIC19.25■□□□□ 0.67
COL4A4P53420 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A4P53420 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A4P53420 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.24■□□□□ 0.67
COL4A4P53420 AC254562.1-201ENST00000417586 456 ntBASIC19.24■□□□□ 0.67
COL4A4P53420 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.24■□□□□ 0.67
COL4A4P53420 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.24■□□□□ 0.67
COL4A4P53420 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL4A4P53420 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A4P53420 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
COL4A4P53420 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A4P53420 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A4P53420 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.24■□□□□ 0.67
COL4A4P53420 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.24■□□□□ 0.67
COL4A4P53420 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.24■□□□□ 0.67
COL4A4P53420 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL4A4P53420 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.24■□□□□ 0.67
COL4A4P53420 MTDHP5-201ENST00000598980 586 ntBASIC19.24■□□□□ 0.67
COL4A4P53420 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
COL4A4P53420 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A4P53420 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
COL4A4P53420 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL4A4P53420 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A4P53420 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL4A4P53420 YBX1P5-201ENST00000509441 847 ntBASIC19.23■□□□□ 0.67
COL4A4P53420 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.23■□□□□ 0.67
COL4A4P53420 SPCS2P1-201ENST00000561636 679 ntBASIC19.23■□□□□ 0.67
COL4A4P53420 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.23■□□□□ 0.67
COL4A4P53420 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
COL4A4P53420 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
COL4A4P53420 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A4P53420 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.22■□□□□ 0.67
COL4A4P53420 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.22■□□□□ 0.67
COL4A4P53420 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.22■□□□□ 0.67
COL4A4P53420 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.22■□□□□ 0.67
COL4A4P53420 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
COL4A4P53420 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.22■□□□□ 0.67
COL4A4P53420 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.22■□□□□ 0.67
COL4A4P53420 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 AL163051.1-201ENST00000569214 1512 ntBASIC19.22■□□□□ 0.67
COL4A4P53420 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A4P53420 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 SDHAP2-201ENST00000455183 2001 ntBASIC19.22■□□□□ 0.67
COL4A4P53420 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
COL4A4P53420 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A4P53420 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A4P53420 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A4P53420 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.21■□□□□ 0.67
COL4A4P53420 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms