Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GNAS-203ENST00000306120 1878 ntBASIC14.79□□□□□ -0.04
CDX1P47902 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC14.79□□□□□ -0.04
CDX1P47902 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC14.79□□□□□ -0.04
CDX1P47902 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.79□□□□□ -0.04
CDX1P47902 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC14.79□□□□□ -0.04
CDX1P47902 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CDX1P47902 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
CDX1P47902 AC007663.1-201ENST00000438948 1240 ntBASIC14.79□□□□□ -0.04
CDX1P47902 ATP5G1P1-201ENST00000448724 379 ntBASIC14.79□□□□□ -0.04
CDX1P47902 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CDX1P47902 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC14.79□□□□□ -0.04
CDX1P47902 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.79□□□□□ -0.04
CDX1P47902 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
CDX1P47902 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.79□□□□□ -0.04
CDX1P47902 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC14.79□□□□□ -0.04
CDX1P47902 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC14.79□□□□□ -0.04
CDX1P47902 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.79□□□□□ -0.04
CDX1P47902 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CDX1P47902 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CDX1P47902 AC135776.1-201ENST00000319817 2481 ntBASIC14.78□□□□□ -0.04
CDX1P47902 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC14.78□□□□□ -0.04
CDX1P47902 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC14.78□□□□□ -0.04
CDX1P47902 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
CDX1P47902 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC14.78□□□□□ -0.04
CDX1P47902 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14.78□□□□□ -0.04
CDX1P47902 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
CDX1P47902 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CDX1P47902 AC073508.3-201ENST00000619697 1419 ntBASIC14.78□□□□□ -0.04
CDX1P47902 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
CDX1P47902 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CDX1P47902 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC14.78□□□□□ -0.04
CDX1P47902 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC14.78□□□□□ -0.04
CDX1P47902 GXYLT1P6-201ENST00000456472 1187 ntBASIC14.78□□□□□ -0.04
CDX1P47902 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 FAM87A-204ENST00000613235 858 ntBASIC14.78□□□□□ -0.04
CDX1P47902 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.78□□□□□ -0.04
CDX1P47902 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
CDX1P47902 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
CDX1P47902 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 SDHAP1-207ENST00000440850 2000 ntBASIC14.78□□□□□ -0.04
CDX1P47902 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.78□□□□□ -0.04
CDX1P47902 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.78□□□□□ -0.04
CDX1P47902 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
CDX1P47902 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC14.78□□□□□ -0.04
CDX1P47902 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.78□□□□□ -0.04
CDX1P47902 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CDX1P47902 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.78□□□□□ -0.04
CDX1P47902 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC14.77□□□□□ -0.04
CDX1P47902 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDX1P47902 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDX1P47902 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC14.77□□□□□ -0.04
CDX1P47902 AC093525.10-201ENST00000625130 1569 ntBASIC14.77□□□□□ -0.04
CDX1P47902 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDX1P47902 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDX1P47902 AL161938.1-201ENST00000569833 2180 ntBASIC14.77□□□□□ -0.04
CDX1P47902 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDX1P47902 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.77□□□□□ -0.04
CDX1P47902 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.77□□□□□ -0.04
CDX1P47902 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDX1P47902 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.77□□□□□ -0.04
CDX1P47902 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC14.77□□□□□ -0.04
CDX1P47902 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDX1P47902 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CDX1P47902 AC103702.1-201ENST00000548801 2630 ntBASIC14.77□□□□□ -0.04
CDX1P47902 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CDX1P47902 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC14.77□□□□□ -0.05
CDX1P47902 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC14.77□□□□□ -0.05
CDX1P47902 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC14.77□□□□□ -0.05
CDX1P47902 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC14.77□□□□□ -0.05
CDX1P47902 RN7SL850P-201ENST00000579959 291 ntBASIC14.77□□□□□ -0.05
CDX1P47902 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC14.77□□□□□ -0.05
CDX1P47902 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CDX1P47902 AC068418.2-201ENST00000577309 3703 ntBASIC14.77□□□□□ -0.05
CDX1P47902 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms