Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL11A1P12107 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
COL11A1P12107 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL11A1P12107 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL11A1P12107 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.45■□□□□ 0.86
COL11A1P12107 MED15P5-201ENST00000423150 992 ntBASIC20.45■□□□□ 0.86
COL11A1P12107 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.45■□□□□ 0.86
COL11A1P12107 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.45■□□□□ 0.86
COL11A1P12107 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.45■□□□□ 0.86
COL11A1P12107 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
COL11A1P12107 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL11A1P12107 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL11A1P12107 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL11A1P12107 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL11A1P12107 HLA-J-201ENST00000462773 1622 ntBASIC20.45■□□□□ 0.86
COL11A1P12107 AL096828.2-201ENST00000567259 1965 ntBASIC20.44■□□□□ 0.86
COL11A1P12107 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
COL11A1P12107 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 AC073621.1-201ENST00000392730 636 ntBASIC20.44■□□□□ 0.86
COL11A1P12107 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.44■□□□□ 0.86
COL11A1P12107 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.44■□□□□ 0.86
COL11A1P12107 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL11A1P12107 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL11A1P12107 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL11A1P12107 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 PMS2P7-201ENST00000506558 1336 ntBASIC20.44■□□□□ 0.86
COL11A1P12107 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL11A1P12107 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL11A1P12107 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.43■□□□□ 0.86
COL11A1P12107 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.43■□□□□ 0.86
COL11A1P12107 BX005266.1-201ENST00000473402 457 ntBASIC20.43■□□□□ 0.86
COL11A1P12107 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
COL11A1P12107 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.43■□□□□ 0.86
COL11A1P12107 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
COL11A1P12107 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.43■□□□□ 0.86
COL11A1P12107 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL11A1P12107 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL11A1P12107 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL11A1P12107 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.43■□□□□ 0.86
COL11A1P12107 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.43■□□□□ 0.86
COL11A1P12107 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL11A1P12107 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL11A1P12107 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL11A1P12107 AC104109.2-201ENST00000602919 1418 ntBASIC20.43■□□□□ 0.86
COL11A1P12107 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL11A1P12107 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC20.43■□□□□ 0.86
COL11A1P12107 BX842568.4-201ENST00000421222 227 ntBASIC20.43■□□□□ 0.86
COL11A1P12107 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
COL11A1P12107 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL11A1P12107 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.43■□□□□ 0.86
COL11A1P12107 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.43■□□□□ 0.86
COL11A1P12107 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.43■□□□□ 0.86
COL11A1P12107 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL11A1P12107 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL11A1P12107 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL11A1P12107 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL11A1P12107 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.42■□□□□ 0.86
COL11A1P12107 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
COL11A1P12107 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
COL11A1P12107 AC100803.2-201ENST00000562459 1963 ntBASIC20.42■□□□□ 0.86
COL11A1P12107 NCF1C-201ENST00000438382 1427 ntBASIC20.42■□□□□ 0.86
COL11A1P12107 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.42■□□□□ 0.86
COL11A1P12107 LAGE3P1-201ENST00000425356 484 ntBASIC20.42■□□□□ 0.86
COL11A1P12107 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.42■□□□□ 0.86
COL11A1P12107 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL11A1P12107 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.42■□□□□ 0.86
COL11A1P12107 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
COL11A1P12107 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
COL11A1P12107 FAM197Y3-203ENST00000618346 717 ntBASIC20.42■□□□□ 0.86
COL11A1P12107 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
COL11A1P12107 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.42■□□□□ 0.86
COL11A1P12107 SIRPAP1-201ENST00000448467 1770 ntBASIC20.42■□□□□ 0.86
COL11A1P12107 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.42■□□□□ 0.86
COL11A1P12107 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
COL11A1P12107 WIZP1-201ENST00000531444 2299 ntBASIC20.42■□□□□ 0.86
COL11A1P12107 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
COL11A1P12107 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL11A1P12107 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL11A1P12107 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL11A1P12107 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL11A1P12107 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.42■□□□□ 0.86
COL11A1P12107 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL11A1P12107 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
COL11A1P12107 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.41■□□□□ 0.86
COL11A1P12107 AC004817.3-201ENST00000602957 2129 ntBASIC20.41■□□□□ 0.86
COL11A1P12107 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.41■□□□□ 0.86
COL11A1P12107 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL11A1P12107 ZNF259P1-201ENST00000407656 1365 ntBASIC20.41■□□□□ 0.86
COL11A1P12107 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
COL11A1P12107 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.41■□□□□ 0.86
COL11A1P12107 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL11A1P12107 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL11A1P12107 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms