Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC063952.2-201ENST00000498792 1227 ntBASIC21.36■■□□□ 1.01
HMGB1P09429 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB1P09429 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.36■■□□□ 1.01
HMGB1P09429 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.36■■□□□ 1.01
HMGB1P09429 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB1P09429 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB1P09429 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB1P09429 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB1P09429 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
HMGB1P09429 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB1P09429 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.36■■□□□ 1.01
HMGB1P09429 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGB1P09429 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.35■■□□□ 1.01
HMGB1P09429 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
HMGB1P09429 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
HMGB1P09429 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HMGB1P09429 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
HMGB1P09429 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.35■■□□□ 1.01
HMGB1P09429 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGB1P09429 MIR662-201ENST00000384847 95 ntBASIC21.35■■□□□ 1.01
HMGB1P09429 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.35■■□□□ 1.01
HMGB1P09429 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.35■■□□□ 1.01
HMGB1P09429 KRT18P65-201ENST00000439811 1286 ntBASIC21.35■■□□□ 1.01
HMGB1P09429 KRT18P38-201ENST00000449496 1282 ntBASIC21.35■■□□□ 1.01
HMGB1P09429 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.35■■□□□ 1.01
HMGB1P09429 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
HMGB1P09429 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.35■■□□□ 1.01
HMGB1P09429 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
HMGB1P09429 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGB1P09429 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
HMGB1P09429 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGB1P09429 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.34■■□□□ 1.01
HMGB1P09429 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGB1P09429 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGB1P09429 AC112907.2-201ENST00000448639 330 ntBASIC21.34■■□□□ 1.01
HMGB1P09429 AL359075.1-203ENST00000462729 1002 ntBASIC21.34■■□□□ 1.01
HMGB1P09429 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
HMGB1P09429 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC21.34■■□□□ 1.01
HMGB1P09429 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.34■■□□□ 1.01
HMGB1P09429 LINC01238-205ENST00000567549 1107 ntBASIC21.34■■□□□ 1.01
HMGB1P09429 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.34■■□□□ 1.01
HMGB1P09429 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
HMGB1P09429 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGB1P09429 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGB1P09429 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.34■■□□□ 1.01
HMGB1P09429 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGB1P09429 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
HMGB1P09429 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
HMGB1P09429 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGB1P09429 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGB1P09429 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGB1P09429 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.33■■□□□ 1.01
HMGB1P09429 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.33■■□□□ 1.01
HMGB1P09429 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.33■■□□□ 1.01
HMGB1P09429 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.33■■□□□ 1.01
HMGB1P09429 HYMAI.1-201ENST00000620949 238 ntBASIC21.33■■□□□ 1.01
HMGB1P09429 AC134043.2-201ENST00000624206 2238 ntBASIC21.33■■□□□ 1
HMGB1P09429 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGB1P09429 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGB1P09429 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.33■■□□□ 1
HMGB1P09429 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.33■■□□□ 1
HMGB1P09429 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.33■■□□□ 1
HMGB1P09429 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
HMGB1P09429 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms