Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
SEMA3DO95025 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.34■□□□□ 0.37
SEMA3DO95025 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.34■□□□□ 0.37
SEMA3DO95025 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
SEMA3DO95025 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.34■□□□□ 0.37
SEMA3DO95025 RASA4DP-201ENST00000460726 1199 ntBASIC17.34■□□□□ 0.37
SEMA3DO95025 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SEMA3DO95025 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 AL441883.1-201ENST00000566170 1045 ntBASIC17.34■□□□□ 0.37
SEMA3DO95025 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.34■□□□□ 0.37
SEMA3DO95025 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.34■□□□□ 0.37
SEMA3DO95025 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.34■□□□□ 0.37
SEMA3DO95025 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SEMA3DO95025 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.33■□□□□ 0.37
SEMA3DO95025 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
SEMA3DO95025 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SEMA3DO95025 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SEMA3DO95025 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SEMA3DO95025 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SEMA3DO95025 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SEMA3DO95025 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
SEMA3DO95025 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.33■□□□□ 0.37
SEMA3DO95025 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SEMA3DO95025 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SEMA3DO95025 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
SEMA3DO95025 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SEMA3DO95025 KRT89P-201ENST00000620027 1478 ntBASIC17.33■□□□□ 0.37
SEMA3DO95025 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SEMA3DO95025 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.33■□□□□ 0.36
SEMA3DO95025 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SEMA3DO95025 STARP1-201ENST00000397973 869 ntBASIC17.33■□□□□ 0.36
SEMA3DO95025 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SEMA3DO95025 AC211429.1-201ENST00000415277 523 ntBASIC17.33■□□□□ 0.36
SEMA3DO95025 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.33■□□□□ 0.36
SEMA3DO95025 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.33■□□□□ 0.36
SEMA3DO95025 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
SEMA3DO95025 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.33■□□□□ 0.36
SEMA3DO95025 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.33■□□□□ 0.36
SEMA3DO95025 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.33■□□□□ 0.36
SEMA3DO95025 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SEMA3DO95025 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SEMA3DO95025 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.33■□□□□ 0.36
SEMA3DO95025 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SEMA3DO95025 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SEMA3DO95025 AC008764.6-201ENST00000595909 2069 ntBASIC17.33■□□□□ 0.36
SEMA3DO95025 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SEMA3DO95025 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SEMA3DO95025 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.33■□□□□ 0.36
SEMA3DO95025 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SEMA3DO95025 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.33■□□□□ 0.36
SEMA3DO95025 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
SEMA3DO95025 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.32■□□□□ 0.36
SEMA3DO95025 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.32■□□□□ 0.36
SEMA3DO95025 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.32■□□□□ 0.36
SEMA3DO95025 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SEMA3DO95025 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SEMA3DO95025 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
SEMA3DO95025 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.32■□□□□ 0.36
SEMA3DO95025 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 AC005521.1-201ENST00000393351 872 ntBASIC17.32■□□□□ 0.36
SEMA3DO95025 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SEMA3DO95025 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
SEMA3DO95025 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SEMA3DO95025 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 YBX1P2-201ENST00000489612 999 ntBASIC17.32■□□□□ 0.36
SEMA3DO95025 AC113404.2-201ENST00000507884 177 ntBASIC17.32■□□□□ 0.36
SEMA3DO95025 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.32■□□□□ 0.36
SEMA3DO95025 DUTP2-201ENST00000519164 463 ntBASIC17.32■□□□□ 0.36
SEMA3DO95025 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.32■□□□□ 0.36
SEMA3DO95025 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.32■□□□□ 0.36
SEMA3DO95025 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.32■□□□□ 0.36
SEMA3DO95025 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.32■□□□□ 0.36
SEMA3DO95025 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SEMA3DO95025 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SEMA3DO95025 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms