Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDKL5O76039 AC068880.1-201ENST00000507289 2297 ntBASIC21.06■□□□□ 0.96
CDKL5O76039 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CDKL5O76039 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 LINC00167-201ENST00000530583 1419 ntBASIC21.05■□□□□ 0.96
CDKL5O76039 KRT18P55-202ENST00000578578 1546 ntBASIC21.05■□□□□ 0.96
CDKL5O76039 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC21.05■□□□□ 0.96
CDKL5O76039 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.05■□□□□ 0.96
CDKL5O76039 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CDKL5O76039 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
CDKL5O76039 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.05■□□□□ 0.96
CDKL5O76039 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.05■□□□□ 0.96
CDKL5O76039 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.05■□□□□ 0.96
CDKL5O76039 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.05■□□□□ 0.96
CDKL5O76039 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
CDKL5O76039 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.05■□□□□ 0.96
CDKL5O76039 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
CDKL5O76039 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
CDKL5O76039 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CDKL5O76039 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
CDKL5O76039 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDKL5O76039 AC022898.2-201ENST00000616822 1312 ntBASIC21.04■□□□□ 0.96
CDKL5O76039 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.04■□□□□ 0.96
CDKL5O76039 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.04■□□□□ 0.96
CDKL5O76039 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDKL5O76039 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDKL5O76039 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.04■□□□□ 0.96
CDKL5O76039 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDKL5O76039 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDKL5O76039 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDKL5O76039 KRT18P48-201ENST00000434763 852 ntBASIC21.04■□□□□ 0.96
CDKL5O76039 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.04■□□□□ 0.96
CDKL5O76039 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.04■□□□□ 0.96
CDKL5O76039 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDKL5O76039 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.04■□□□□ 0.96
CDKL5O76039 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.04■□□□□ 0.96
CDKL5O76039 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.04■□□□□ 0.96
CDKL5O76039 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CDKL5O76039 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
CDKL5O76039 AL133373.2-201ENST00000623187 2828 ntBASIC21.04■□□□□ 0.96
CDKL5O76039 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDKL5O76039 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDKL5O76039 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDKL5O76039 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 LINC00602-201ENST00000629776 2065 ntBASIC21.03■□□□□ 0.96
CDKL5O76039 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.03■□□□□ 0.96
CDKL5O76039 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.03■□□□□ 0.96
CDKL5O76039 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CDKL5O76039 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.03■□□□□ 0.96
CDKL5O76039 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 AL359075.1-203ENST00000462729 1002 ntBASIC21.03■□□□□ 0.96
CDKL5O76039 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.03■□□□□ 0.96
CDKL5O76039 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.03■□□□□ 0.96
CDKL5O76039 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.03■□□□□ 0.96
CDKL5O76039 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.03■□□□□ 0.96
CDKL5O76039 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.03■□□□□ 0.96
CDKL5O76039 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CDKL5O76039 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.03■□□□□ 0.96
CDKL5O76039 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CDKL5O76039 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CDKL5O76039 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.03■□□□□ 0.96
CDKL5O76039 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDKL5O76039 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.03■□□□□ 0.96
CDKL5O76039 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CDKL5O76039 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.02■□□□□ 0.96
CDKL5O76039 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDKL5O76039 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDKL5O76039 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms