Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.66■□□□□ 0.42
SDC3O75056 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.66■□□□□ 0.42
SDC3O75056 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.66■□□□□ 0.42
SDC3O75056 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.66■□□□□ 0.42
SDC3O75056 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
SDC3O75056 MIR940-201ENST00000401276 94 ntBASIC17.66■□□□□ 0.42
SDC3O75056 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.66■□□□□ 0.42
SDC3O75056 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.66■□□□□ 0.42
SDC3O75056 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.66■□□□□ 0.42
SDC3O75056 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.66■□□□□ 0.42
SDC3O75056 AL138831.2-201ENST00000606564 490 ntBASIC17.66■□□□□ 0.42
SDC3O75056 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SDC3O75056 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SDC3O75056 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.66■□□□□ 0.42
SDC3O75056 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.66■□□□□ 0.42
SDC3O75056 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC3O75056 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SDC3O75056 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
SDC3O75056 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 INTS4P1-201ENST00000438455 1935 ntBASIC17.65■□□□□ 0.42
SDC3O75056 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SDC3O75056 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 HNRNPDP1-201ENST00000439535 754 ntBASIC17.65■□□□□ 0.42
SDC3O75056 POLD2P1-201ENST00000511220 997 ntBASIC17.65■□□□□ 0.42
SDC3O75056 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SDC3O75056 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.65■□□□□ 0.42
SDC3O75056 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.65■□□□□ 0.42
SDC3O75056 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.65■□□□□ 0.42
SDC3O75056 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SDC3O75056 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.65■□□□□ 0.42
SDC3O75056 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SDC3O75056 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDC3O75056 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.65■□□□□ 0.42
SDC3O75056 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.42
SDC3O75056 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SDC3O75056 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SDC3O75056 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SDC3O75056 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
SDC3O75056 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SDC3O75056 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.64■□□□□ 0.41
SDC3O75056 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SDC3O75056 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC3O75056 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC3O75056 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SDC3O75056 RBM17P3-201ENST00000417687 1192 ntBASIC17.64■□□□□ 0.41
SDC3O75056 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.64■□□□□ 0.41
SDC3O75056 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC3O75056 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.64■□□□□ 0.41
SDC3O75056 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC3O75056 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDC3O75056 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.64■□□□□ 0.41
SDC3O75056 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
SDC3O75056 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.64■□□□□ 0.41
SDC3O75056 FAM215A-202ENST00000632077 792 ntBASIC17.64■□□□□ 0.41
SDC3O75056 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC3O75056 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC3O75056 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.64■□□□□ 0.41
SDC3O75056 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SDC3O75056 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SDC3O75056 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SDC3O75056 AC125634.1-201ENST00000438758 1403 ntBASIC17.64■□□□□ 0.41
SDC3O75056 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC3O75056 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
SDC3O75056 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
SDC3O75056 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.63■□□□□ 0.41
SDC3O75056 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
SDC3O75056 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SDC3O75056 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.63■□□□□ 0.41
SDC3O75056 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
SDC3O75056 SCARNA2-201ENST00000458748 420 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms