Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC15.93■□□□□ 0.14
LMX1BO60663 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.93■□□□□ 0.14
LMX1BO60663 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
LMX1BO60663 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC15.93■□□□□ 0.14
LMX1BO60663 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC15.93■□□□□ 0.14
LMX1BO60663 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.93■□□□□ 0.14
LMX1BO60663 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC15.93■□□□□ 0.14
LMX1BO60663 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC15.93■□□□□ 0.14
LMX1BO60663 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.93■□□□□ 0.14
LMX1BO60663 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.93■□□□□ 0.14
LMX1BO60663 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
LMX1BO60663 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.93■□□□□ 0.14
LMX1BO60663 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC15.93■□□□□ 0.14
LMX1BO60663 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LMX1BO60663 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 SDHAP2-201ENST00000455183 2001 ntBASIC15.92■□□□□ 0.14
LMX1BO60663 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC15.92■□□□□ 0.14
LMX1BO60663 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
LMX1BO60663 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.92■□□□□ 0.14
LMX1BO60663 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.92■□□□□ 0.14
LMX1BO60663 IER3-202ENST00000376377 1350 ntBASIC15.92■□□□□ 0.14
LMX1BO60663 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
LMX1BO60663 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC15.92■□□□□ 0.14
LMX1BO60663 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC15.92■□□□□ 0.14
LMX1BO60663 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LMX1BO60663 AP000593.1-201ENST00000393668 712 ntBASIC15.92■□□□□ 0.14
LMX1BO60663 TPM4P1-201ENST00000436100 807 ntBASIC15.92■□□□□ 0.14
LMX1BO60663 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 FAM86EP-206ENST00000510506 987 ntBASIC15.92■□□□□ 0.14
LMX1BO60663 AL353719.1-201ENST00000566847 864 ntBASIC15.92■□□□□ 0.14
LMX1BO60663 MIR3180-5-201ENST00000583743 153 ntBASIC15.92■□□□□ 0.14
LMX1BO60663 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC15.92■□□□□ 0.14
LMX1BO60663 AC093458.2-201ENST00000623150 629 ntBASIC15.92■□□□□ 0.14
LMX1BO60663 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC15.92■□□□□ 0.14
LMX1BO60663 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LMX1BO60663 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.92■□□□□ 0.14
LMX1BO60663 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1BO60663 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
LMX1BO60663 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.91■□□□□ 0.14
LMX1BO60663 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.91■□□□□ 0.14
LMX1BO60663 AC012317.2-201ENST00000623305 2251 ntBASIC15.91■□□□□ 0.14
LMX1BO60663 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.91■□□□□ 0.14
LMX1BO60663 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
LMX1BO60663 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.91■□□□□ 0.14
LMX1BO60663 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.91■□□□□ 0.14
LMX1BO60663 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC15.91■□□□□ 0.14
LMX1BO60663 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
LMX1BO60663 AL121894.2-201ENST00000602977 491 ntBASIC15.91■□□□□ 0.14
LMX1BO60663 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.91■□□□□ 0.14
LMX1BO60663 AL023803.3-201ENST00000615559 522 ntBASIC15.91■□□□□ 0.14
LMX1BO60663 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC15.91■□□□□ 0.14
LMX1BO60663 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.91■□□□□ 0.14
LMX1BO60663 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.91■□□□□ 0.14
LMX1BO60663 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.91■□□□□ 0.14
LMX1BO60663 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LMX1BO60663 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15.91■□□□□ 0.14
LMX1BO60663 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1BO60663 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms