Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HMGB3O15347 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC14.58□□□□□ -0.08
HMGB3O15347 AC141586.5-201ENST00000624546 2050 ntBASIC14.58□□□□□ -0.08
HMGB3O15347 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HMGB3O15347 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGB3O15347 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGB3O15347 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC14.58□□□□□ -0.08
HMGB3O15347 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGB3O15347 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
HMGB3O15347 PNN-205ENST00000556530 601 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGB3O15347 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC14.58□□□□□ -0.08
HMGB3O15347 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
HMGB3O15347 AL121906.2-201ENST00000621597 723 ntBASIC14.58□□□□□ -0.08
HMGB3O15347 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
HMGB3O15347 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGB3O15347 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HMGB3O15347 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HMGB3O15347 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.58□□□□□ -0.08
HMGB3O15347 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HMGB3O15347 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGB3O15347 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGB3O15347 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC14.57□□□□□ -0.08
HMGB3O15347 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HMGB3O15347 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGB3O15347 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGB3O15347 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC14.57□□□□□ -0.08
HMGB3O15347 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 AC073210.2-201ENST00000430369 194 ntBASIC14.57□□□□□ -0.08
HMGB3O15347 LGR4-203ENST00000480977 492 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGB3O15347 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
HMGB3O15347 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGB3O15347 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC14.57□□□□□ -0.08
HMGB3O15347 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC14.57□□□□□ -0.08
HMGB3O15347 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.57□□□□□ -0.08
HMGB3O15347 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGB3O15347 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGB3O15347 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
HMGB3O15347 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HMGB3O15347 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGB3O15347 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC14.56□□□□□ -0.08
HMGB3O15347 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
HMGB3O15347 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HMGB3O15347 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HMGB3O15347 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC14.56□□□□□ -0.08
HMGB3O15347 AL512625.2-201ENST00000417533 625 ntBASIC14.56□□□□□ -0.08
HMGB3O15347 GXYLT1P2-201ENST00000433312 1230 ntBASIC14.56□□□□□ -0.08
HMGB3O15347 SLC25A6P5-201ENST00000435663 894 ntBASIC14.56□□□□□ -0.08
HMGB3O15347 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 MAZ-216ENST00000616501 991 ntTSL 5 BASIC14.56□□□□□ -0.08
HMGB3O15347 AC231657.2-201ENST00000624556 255 ntBASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms