Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRIM38O00635 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
TRIM38O00635 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 AC067852.2-201ENST00000590513 2313 ntBASIC18.22■□□□□ 0.51
TRIM38O00635 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
TRIM38O00635 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
TRIM38O00635 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 TSPY22P-201ENST00000427496 604 ntBASIC18.22■□□□□ 0.51
TRIM38O00635 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.22■□□□□ 0.51
TRIM38O00635 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
TRIM38O00635 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.22■□□□□ 0.51
TRIM38O00635 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
TRIM38O00635 RNF126P1-202ENST00000569893 925 ntBASIC18.22■□□□□ 0.51
TRIM38O00635 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM38O00635 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM38O00635 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM38O00635 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM38O00635 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM38O00635 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM38O00635 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
TRIM38O00635 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.22■□□□□ 0.51
TRIM38O00635 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TRIM38O00635 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRIM38O00635 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM38O00635 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.21■□□□□ 0.51
TRIM38O00635 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TRIM38O00635 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.21■□□□□ 0.51
TRIM38O00635 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.21■□□□□ 0.51
TRIM38O00635 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.21■□□□□ 0.51
TRIM38O00635 CHCHD2P8-201ENST00000429873 447 ntBASIC18.21■□□□□ 0.51
TRIM38O00635 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.21■□□□□ 0.51
TRIM38O00635 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.21■□□□□ 0.51
TRIM38O00635 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.21■□□□□ 0.51
TRIM38O00635 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.21■□□□□ 0.51
TRIM38O00635 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.21■□□□□ 0.51
TRIM38O00635 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.21■□□□□ 0.51
TRIM38O00635 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
TRIM38O00635 AC083906.6-201ENST00000641366 219 ntBASIC18.21■□□□□ 0.51
TRIM38O00635 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
TRIM38O00635 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
TRIM38O00635 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.21■□□□□ 0.51
TRIM38O00635 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRIM38O00635 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
TRIM38O00635 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM38O00635 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM38O00635 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TRIM38O00635 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM38O00635 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM38O00635 AC008556.1-201ENST00000610908 2040 ntBASIC18.2■□□□□ 0.5
TRIM38O00635 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM38O00635 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM38O00635 RCC2P3-201ENST00000418112 1537 ntBASIC18.2■□□□□ 0.5
TRIM38O00635 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.2■□□□□ 0.5
TRIM38O00635 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.2■□□□□ 0.5
TRIM38O00635 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM38O00635 AL109659.2-201ENST00000606809 1674 ntBASIC18.2■□□□□ 0.5
TRIM38O00635 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRIM38O00635 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms