Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC15.43■□□□□ 0.06
SDCBPO00560 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15.43■□□□□ 0.06
SDCBPO00560 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.43■□□□□ 0.06
SDCBPO00560 AC008550.1-201ENST00000511500 884 ntBASIC15.43■□□□□ 0.06
SDCBPO00560 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.43■□□□□ 0.06
SDCBPO00560 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.43■□□□□ 0.06
SDCBPO00560 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC15.43■□□□□ 0.06
SDCBPO00560 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SDCBPO00560 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.43■□□□□ 0.06
SDCBPO00560 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
SDCBPO00560 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.43■□□□□ 0.06
SDCBPO00560 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC15.43■□□□□ 0.06
SDCBPO00560 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
SDCBPO00560 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SDCBPO00560 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
SDCBPO00560 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SDCBPO00560 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.43■□□□□ 0.06
SDCBPO00560 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SDCBPO00560 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
SDCBPO00560 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SDCBPO00560 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SDCBPO00560 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC15.43■□□□□ 0.06
SDCBPO00560 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
SDCBPO00560 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SDCBPO00560 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SDCBPO00560 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 SIRPAP1-201ENST00000448467 1770 ntBASIC15.42■□□□□ 0.06
SDCBPO00560 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC15.42■□□□□ 0.06
SDCBPO00560 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 FDX2-206ENST00000492239 773 ntTSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 AP003071.4-201ENST00000562276 1284 ntBASIC15.42■□□□□ 0.06
SDCBPO00560 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.42■□□□□ 0.06
SDCBPO00560 AP006294.2-201ENST00000641667 209 ntBASIC15.42■□□□□ 0.06
SDCBPO00560 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 AC108860.2-201ENST00000562760 2183 ntBASIC15.42■□□□□ 0.06
SDCBPO00560 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
SDCBPO00560 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
SDCBPO00560 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SDCBPO00560 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.41■□□□□ 0.06
SDCBPO00560 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.41■□□□□ 0.06
SDCBPO00560 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SDCBPO00560 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 ENSA-205ENST00000361532 792 ntTSL 2 BASIC15.41■□□□□ 0.06
SDCBPO00560 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC15.41■□□□□ 0.06
SDCBPO00560 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC15.41■□□□□ 0.06
SDCBPO00560 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC15.41■□□□□ 0.06
SDCBPO00560 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SDCBPO00560 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC15.41■□□□□ 0.06
SDCBPO00560 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC15.41■□□□□ 0.06
SDCBPO00560 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC15.41■□□□□ 0.06
SDCBPO00560 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 PP12613-201ENST00000424958 2230 ntBASIC15.41■□□□□ 0.06
SDCBPO00560 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC15.41■□□□□ 0.06
SDCBPO00560 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.41■□□□□ 0.06
SDCBPO00560 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SDCBPO00560 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.41■□□□□ 0.06
SDCBPO00560 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms