Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 AC112497.1-201ENST00000624824 639 ntBASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CPSF4LA6NMK7 AC012317.2-201ENST00000623305 2251 ntBASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.73■□□□□ 0.27
CPSF4LA6NMK7 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 AC104390.1-201ENST00000555663 520 ntBASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 AC009065.1-201ENST00000564055 1225 ntBASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 TMEM191A-211ENST00000637163 1067 ntBASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CPSF4LA6NMK7 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 AC093010.1-201ENST00000473625 1624 ntBASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CPSF4LA6NMK7 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms