Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CUEDC1Q9NWM3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
CUEDC1Q9NWM3 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CUEDC1Q9NWM3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CUEDC1Q9NWM3 AL449106.1-201ENST00000608517 1980 ntBASIC23.93■■□□□ 1.42
CUEDC1Q9NWM3 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.93■■□□□ 1.42
CUEDC1Q9NWM3 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
CUEDC1Q9NWM3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CUEDC1Q9NWM3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CUEDC1Q9NWM3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CUEDC1Q9NWM3 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CUEDC1Q9NWM3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CUEDC1Q9NWM3 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CUEDC1Q9NWM3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.92■■□□□ 1.42
CUEDC1Q9NWM3 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.91■■□□□ 1.42
CUEDC1Q9NWM3 ABHD17AP5-201ENST00000580133 923 ntBASIC23.91■■□□□ 1.42
CUEDC1Q9NWM3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CUEDC1Q9NWM3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CUEDC1Q9NWM3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
CUEDC1Q9NWM3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.9■■□□□ 1.42
CUEDC1Q9NWM3 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
CUEDC1Q9NWM3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CUEDC1Q9NWM3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CUEDC1Q9NWM3 AL359258.2-201ENST00000564063 1566 ntBASIC23.9■■□□□ 1.42
CUEDC1Q9NWM3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CUEDC1Q9NWM3 RARRES2P2-201ENST00000394842 485 ntBASIC23.89■■□□□ 1.41
CUEDC1Q9NWM3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.89■■□□□ 1.41
CUEDC1Q9NWM3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
CUEDC1Q9NWM3 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CUEDC1Q9NWM3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.88■■□□□ 1.41
CUEDC1Q9NWM3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CUEDC1Q9NWM3 AL121749.1-202ENST00000609313 2153 ntBASIC23.88■■□□□ 1.41
CUEDC1Q9NWM3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.88■■□□□ 1.41
CUEDC1Q9NWM3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUEDC1Q9NWM3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CUEDC1Q9NWM3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CUEDC1Q9NWM3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUEDC1Q9NWM3 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
CUEDC1Q9NWM3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CUEDC1Q9NWM3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CUEDC1Q9NWM3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CUEDC1Q9NWM3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CUEDC1Q9NWM3 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
CUEDC1Q9NWM3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
CUEDC1Q9NWM3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
CUEDC1Q9NWM3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CUEDC1Q9NWM3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CUEDC1Q9NWM3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CUEDC1Q9NWM3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CUEDC1Q9NWM3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CUEDC1Q9NWM3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.85■■□□□ 1.41
CUEDC1Q9NWM3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
CUEDC1Q9NWM3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.85■■□□□ 1.41
CUEDC1Q9NWM3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CUEDC1Q9NWM3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
CUEDC1Q9NWM3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CUEDC1Q9NWM3 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CUEDC1Q9NWM3 AC060814.1-201ENST00000554326 538 ntBASIC23.84■■□□□ 1.41
CUEDC1Q9NWM3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.83■■□□□ 1.41
CUEDC1Q9NWM3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.82■■□□□ 1.4
CUEDC1Q9NWM3 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUEDC1Q9NWM3 AC126177.7-201ENST00000547904 679 ntBASIC23.82■■□□□ 1.4
CUEDC1Q9NWM3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUEDC1Q9NWM3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
CUEDC1Q9NWM3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CUEDC1Q9NWM3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
CUEDC1Q9NWM3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CUEDC1Q9NWM3 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.81■■□□□ 1.4
CUEDC1Q9NWM3 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.81■■□□□ 1.4
CUEDC1Q9NWM3 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
CUEDC1Q9NWM3 AC022413.1-201ENST00000624602 984 ntBASIC23.81■■□□□ 1.4
CUEDC1Q9NWM3 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CUEDC1Q9NWM3 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.81■■□□□ 1.4
CUEDC1Q9NWM3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.8■■□□□ 1.4
CUEDC1Q9NWM3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUEDC1Q9NWM3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.8■■□□□ 1.4
CUEDC1Q9NWM3 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CUEDC1Q9NWM3 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUEDC1Q9NWM3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CUEDC1Q9NWM3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CUEDC1Q9NWM3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CUEDC1Q9NWM3 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.79■■□□□ 1.4
CUEDC1Q9NWM3 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CUEDC1Q9NWM3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CUEDC1Q9NWM3 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CUEDC1Q9NWM3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.78■■□□□ 1.4
CUEDC1Q9NWM3 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUEDC1Q9NWM3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUEDC1Q9NWM3 GPX1-201ENST00000419349 1106 ntBASIC23.77■■□□□ 1.4
CUEDC1Q9NWM3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.77■■□□□ 1.4
CUEDC1Q9NWM3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.77■■□□□ 1.4
CUEDC1Q9NWM3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CUEDC1Q9NWM3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUEDC1Q9NWM3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CUEDC1Q9NWM3 AL157400.5-201ENST00000507624 621 ntBASIC23.76■■□□□ 1.39
CUEDC1Q9NWM3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CUEDC1Q9NWM3 AP004609.3-201ENST00000610705 1884 ntBASIC23.76■■□□□ 1.39
CUEDC1Q9NWM3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CUEDC1Q9NWM3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
CUEDC1Q9NWM3 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms