Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.72■■□□□ 1.07
LIME1Q9H400 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.72■■□□□ 1.07
LIME1Q9H400 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.72■■□□□ 1.07
LIME1Q9H400 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LIME1Q9H400 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIME1Q9H400 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIME1Q9H400 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIME1Q9H400 AL121749.1-202ENST00000609313 2153 ntBASIC21.71■■□□□ 1.07
LIME1Q9H400 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.71■■□□□ 1.07
LIME1Q9H400 AL157400.5-201ENST00000507624 621 ntBASIC21.7■■□□□ 1.06
LIME1Q9H400 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.7■■□□□ 1.06
LIME1Q9H400 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIME1Q9H400 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
LIME1Q9H400 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIME1Q9H400 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIME1Q9H400 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.69■■□□□ 1.06
LIME1Q9H400 AL592293.1-201ENST00000502889 1188 ntBASIC21.69■■□□□ 1.06
LIME1Q9H400 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.69■■□□□ 1.06
LIME1Q9H400 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
LIME1Q9H400 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.69■■□□□ 1.06
LIME1Q9H400 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIME1Q9H400 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIME1Q9H400 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.69■■□□□ 1.06
LIME1Q9H400 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIME1Q9H400 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIME1Q9H400 AL035685.1-201ENST00000636663 812 ntBASIC21.68■■□□□ 1.06
LIME1Q9H400 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIME1Q9H400 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIME1Q9H400 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.67■■□□□ 1.06
LIME1Q9H400 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIME1Q9H400 AL451085.2-201ENST00000605085 799 ntBASIC21.67■■□□□ 1.06
LIME1Q9H400 AC133552.2-201ENST00000619106 1032 ntBASIC21.67■■□□□ 1.06
LIME1Q9H400 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIME1Q9H400 AC009831.1-201ENST00000580420 1582 ntBASIC21.66■■□□□ 1.06
LIME1Q9H400 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIME1Q9H400 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIME1Q9H400 AC126177.7-201ENST00000547904 679 ntBASIC21.66■■□□□ 1.06
LIME1Q9H400 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIME1Q9H400 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIME1Q9H400 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIME1Q9H400 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIME1Q9H400 AC007029.1-201ENST00000604183 313 ntBASIC21.65■■□□□ 1.06
LIME1Q9H400 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIME1Q9H400 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIME1Q9H400 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LIME1Q9H400 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.64■■□□□ 1.05
LIME1Q9H400 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LIME1Q9H400 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
LIME1Q9H400 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIME1Q9H400 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LIME1Q9H400 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LIME1Q9H400 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LIME1Q9H400 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LIME1Q9H400 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LIME1Q9H400 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.62■■□□□ 1.05
LIME1Q9H400 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LIME1Q9H400 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
LIME1Q9H400 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.62■■□□□ 1.05
LIME1Q9H400 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
LIME1Q9H400 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LIME1Q9H400 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LIME1Q9H400 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LIME1Q9H400 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LIME1Q9H400 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LIME1Q9H400 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIME1Q9H400 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LIME1Q9H400 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LIME1Q9H400 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIME1Q9H400 AL592295.1-201ENST00000400984 884 ntBASIC21.6■■□□□ 1.05
LIME1Q9H400 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
LIME1Q9H400 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.6■■□□□ 1.05
LIME1Q9H400 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIME1Q9H400 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.6■■□□□ 1.05
LIME1Q9H400 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.6■■□□□ 1.05
LIME1Q9H400 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.59■■□□□ 1.05
LIME1Q9H400 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIME1Q9H400 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIME1Q9H400 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIME1Q9H400 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIME1Q9H400 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIME1Q9H400 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIME1Q9H400 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LIME1Q9H400 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.59■■□□□ 1.05
LIME1Q9H400 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
LIME1Q9H400 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LIME1Q9H400 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.59■■□□□ 1.05
LIME1Q9H400 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LIME1Q9H400 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
LIME1Q9H400 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.58■■□□□ 1.05
LIME1Q9H400 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.58■■□□□ 1.05
LIME1Q9H400 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.58■■□□□ 1.05
LIME1Q9H400 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIME1Q9H400 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIME1Q9H400 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.58■■□□□ 1.05
LIME1Q9H400 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.58■■□□□ 1.05
LIME1Q9H400 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
LIME1Q9H400 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.57■■□□□ 1.04
LIME1Q9H400 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LIME1Q9H400 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LIME1Q9H400 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms