Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPS4Y2Q8TD47 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RPS4Y2Q8TD47 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.67■■□□□ 1.06
RPS4Y2Q8TD47 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.66■■□□□ 1.06
RPS4Y2Q8TD47 MIR3665-201ENST00000578708 105 ntBASIC21.66■■□□□ 1.06
RPS4Y2Q8TD47 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPS4Y2Q8TD47 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.66■■□□□ 1.06
RPS4Y2Q8TD47 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RPS4Y2Q8TD47 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPS4Y2Q8TD47 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPS4Y2Q8TD47 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RPS4Y2Q8TD47 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.65■■□□□ 1.06
RPS4Y2Q8TD47 AL162393.1-201ENST00000437852 946 ntBASIC21.65■■□□□ 1.06
RPS4Y2Q8TD47 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RPS4Y2Q8TD47 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.64■■□□□ 1.05
RPS4Y2Q8TD47 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RPS4Y2Q8TD47 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.64■■□□□ 1.05
RPS4Y2Q8TD47 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.64■■□□□ 1.05
RPS4Y2Q8TD47 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RPS4Y2Q8TD47 WHAMMP3-201ENST00000611636 1609 ntBASIC21.64■■□□□ 1.05
RPS4Y2Q8TD47 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.63■■□□□ 1.05
RPS4Y2Q8TD47 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RPS4Y2Q8TD47 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RPS4Y2Q8TD47 RPS2P35-201ENST00000443417 897 ntBASIC21.63■■□□□ 1.05
RPS4Y2Q8TD47 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.63■■□□□ 1.05
RPS4Y2Q8TD47 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RPS4Y2Q8TD47 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
RPS4Y2Q8TD47 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RPS4Y2Q8TD47 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.63■■□□□ 1.05
RPS4Y2Q8TD47 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
RPS4Y2Q8TD47 AC110285.7-201ENST00000624417 1536 ntBASIC21.62■■□□□ 1.05
RPS4Y2Q8TD47 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
RPS4Y2Q8TD47 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RPS4Y2Q8TD47 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.61■■□□□ 1.05
RPS4Y2Q8TD47 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RPS4Y2Q8TD47 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RPS4Y2Q8TD47 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.61■■□□□ 1.05
RPS4Y2Q8TD47 AC093323.1-202ENST00000635031 2045 ntBASIC21.61■■□□□ 1.05
RPS4Y2Q8TD47 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RPS4Y2Q8TD47 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
RPS4Y2Q8TD47 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RPS4Y2Q8TD47 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
RPS4Y2Q8TD47 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
RPS4Y2Q8TD47 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.6■■□□□ 1.05
RPS4Y2Q8TD47 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RPS4Y2Q8TD47 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RPS4Y2Q8TD47 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
RPS4Y2Q8TD47 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
RPS4Y2Q8TD47 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RPS4Y2Q8TD47 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RPS4Y2Q8TD47 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RPS4Y2Q8TD47 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RPS4Y2Q8TD47 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
RPS4Y2Q8TD47 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
RPS4Y2Q8TD47 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.58■■□□□ 1.05
RPS4Y2Q8TD47 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.58■■□□□ 1.05
RPS4Y2Q8TD47 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.58■■□□□ 1.05
RPS4Y2Q8TD47 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RPS4Y2Q8TD47 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RPS4Y2Q8TD47 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RPS4Y2Q8TD47 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RPS4Y2Q8TD47 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RPS4Y2Q8TD47 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPS4Y2Q8TD47 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPS4Y2Q8TD47 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPS4Y2Q8TD47 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPS4Y2Q8TD47 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.55■■□□□ 1.04
RPS4Y2Q8TD47 AC010501.1-201ENST00000606270 1962 ntBASIC21.55■■□□□ 1.04
RPS4Y2Q8TD47 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPS4Y2Q8TD47 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPS4Y2Q8TD47 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RPS4Y2Q8TD47 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RPS4Y2Q8TD47 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPS4Y2Q8TD47 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RPS4Y2Q8TD47 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPS4Y2Q8TD47 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPS4Y2Q8TD47 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPS4Y2Q8TD47 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RPS4Y2Q8TD47 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPS4Y2Q8TD47 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.52■■□□□ 1.04
RPS4Y2Q8TD47 ERN1-208ENST00000606895 2068 ntBASIC21.51■■□□□ 1.03
RPS4Y2Q8TD47 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RPS4Y2Q8TD47 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.51■■□□□ 1.03
RPS4Y2Q8TD47 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RPS4Y2Q8TD47 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RPS4Y2Q8TD47 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.51■■□□□ 1.03
RPS4Y2Q8TD47 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RPS4Y2Q8TD47 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
RPS4Y2Q8TD47 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
RPS4Y2Q8TD47 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RPS4Y2Q8TD47 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RPS4Y2Q8TD47 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RPS4Y2Q8TD47 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RPS4Y2Q8TD47 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.49■■□□□ 1.03
RPS4Y2Q8TD47 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RPS4Y2Q8TD47 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.49■■□□□ 1.03
RPS4Y2Q8TD47 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RPS4Y2Q8TD47 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RPS4Y2Q8TD47 AC087741.3-201ENST00000624270 1347 ntBASIC21.49■■□□□ 1.03
RPS4Y2Q8TD47 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms