Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
NKX2-3Q8TAU0 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
NKX2-3Q8TAU0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC29.54■■■□□ 2.32
NKX2-3Q8TAU0 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
NKX2-3Q8TAU0 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
NKX2-3Q8TAU0 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC29.54■■■□□ 2.32
NKX2-3Q8TAU0 BX255925.1-201ENST00000566954 1854 ntBASIC29.54■■■□□ 2.32
NKX2-3Q8TAU0 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC29.54■■■□□ 2.32
NKX2-3Q8TAU0 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
NKX2-3Q8TAU0 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC29.52■■■□□ 2.32
NKX2-3Q8TAU0 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC29.52■■■□□ 2.32
NKX2-3Q8TAU0 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
NKX2-3Q8TAU0 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
NKX2-3Q8TAU0 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
NKX2-3Q8TAU0 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC29.51■■■□□ 2.31
NKX2-3Q8TAU0 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
NKX2-3Q8TAU0 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC29.5■■■□□ 2.31
NKX2-3Q8TAU0 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
NKX2-3Q8TAU0 TSPY13P-201ENST00000338964 914 ntBASIC29.5■■■□□ 2.31
NKX2-3Q8TAU0 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC29.5■■■□□ 2.31
NKX2-3Q8TAU0 U85056.1-201ENST00000616429 682 ntBASIC29.5■■■□□ 2.31
NKX2-3Q8TAU0 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
NKX2-3Q8TAU0 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC29.5■■■□□ 2.31
NKX2-3Q8TAU0 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC29.49■■■□□ 2.31
NKX2-3Q8TAU0 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC29.49■■■□□ 2.31
NKX2-3Q8TAU0 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC29.49■■■□□ 2.31
NKX2-3Q8TAU0 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
NKX2-3Q8TAU0 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
NKX2-3Q8TAU0 HYI-213ENST00000583037 1322 ntTSL 5 BASIC29.48■■■□□ 2.31
NKX2-3Q8TAU0 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC29.48■■■□□ 2.31
NKX2-3Q8TAU0 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
NKX2-3Q8TAU0 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC29.47■■■□□ 2.31
NKX2-3Q8TAU0 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
NKX2-3Q8TAU0 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.31
NKX2-3Q8TAU0 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
NKX2-3Q8TAU0 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.31
NKX2-3Q8TAU0 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC29.45■■■□□ 2.3
NKX2-3Q8TAU0 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC29.44■■■□□ 2.3
NKX2-3Q8TAU0 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
NKX2-3Q8TAU0 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
NKX2-3Q8TAU0 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
NKX2-3Q8TAU0 AC060814.1-201ENST00000554326 538 ntBASIC29.44■■■□□ 2.3
NKX2-3Q8TAU0 GFER-205ENST00000569451 517 ntTSL 5 BASIC29.44■■■□□ 2.3
NKX2-3Q8TAU0 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC29.43■■■□□ 2.3
NKX2-3Q8TAU0 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
NKX2-3Q8TAU0 RARRES2P1-201ENST00000474487 481 ntBASIC29.43■■■□□ 2.3
NKX2-3Q8TAU0 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
NKX2-3Q8TAU0 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC29.42■■■□□ 2.3
NKX2-3Q8TAU0 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
NKX2-3Q8TAU0 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
NKX2-3Q8TAU0 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC29.41■■■□□ 2.3
NKX2-3Q8TAU0 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC29.41■■■□□ 2.3
NKX2-3Q8TAU0 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
NKX2-3Q8TAU0 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
NKX2-3Q8TAU0 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
NKX2-3Q8TAU0 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
NKX2-3Q8TAU0 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC29.4■■■□□ 2.3
NKX2-3Q8TAU0 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
NKX2-3Q8TAU0 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
NKX2-3Q8TAU0 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
NKX2-3Q8TAU0 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
NKX2-3Q8TAU0 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
NKX2-3Q8TAU0 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC29.39■■■□□ 2.3
NKX2-3Q8TAU0 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC29.39■■■□□ 2.3
NKX2-3Q8TAU0 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC29.39■■■□□ 2.29
NKX2-3Q8TAU0 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
NKX2-3Q8TAU0 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
NKX2-3Q8TAU0 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
NKX2-3Q8TAU0 ATP5G2P3-201ENST00000429083 425 ntBASIC29.38■■■□□ 2.29
NKX2-3Q8TAU0 AL157400.5-201ENST00000507624 621 ntBASIC29.38■■■□□ 2.29
NKX2-3Q8TAU0 AL449106.1-201ENST00000608517 1980 ntBASIC29.38■■■□□ 2.29
NKX2-3Q8TAU0 AC004987.1-201ENST00000428627 508 ntBASIC29.37■■■□□ 2.29
NKX2-3Q8TAU0 AL359258.2-201ENST00000564063 1566 ntBASIC29.36■■■□□ 2.29
NKX2-3Q8TAU0 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
NKX2-3Q8TAU0 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC29.36■■■□□ 2.29
NKX2-3Q8TAU0 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
NKX2-3Q8TAU0 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC29.36■■■□□ 2.29
NKX2-3Q8TAU0 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC29.35■■■□□ 2.29
NKX2-3Q8TAU0 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
NKX2-3Q8TAU0 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC29.34■■■□□ 2.29
NKX2-3Q8TAU0 MOB2-207ENST00000614710 705 ntTSL 5 BASIC29.34■■■□□ 2.29
NKX2-3Q8TAU0 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
NKX2-3Q8TAU0 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC29.34■■■□□ 2.29
NKX2-3Q8TAU0 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
NKX2-3Q8TAU0 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
NKX2-3Q8TAU0 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
NKX2-3Q8TAU0 GUK1-208ENST00000366728 842 ntTSL 2 BASIC29.33■■■□□ 2.29
NKX2-3Q8TAU0 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
NKX2-3Q8TAU0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
NKX2-3Q8TAU0 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
NKX2-3Q8TAU0 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
NKX2-3Q8TAU0 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
NKX2-3Q8TAU0 WHAMMP3-201ENST00000611636 1609 ntBASIC29.32■■■□□ 2.28
NKX2-3Q8TAU0 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC29.32■■■□□ 2.28
NKX2-3Q8TAU0 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
NKX2-3Q8TAU0 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
NKX2-3Q8TAU0 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC29.32■■■□□ 2.28
NKX2-3Q8TAU0 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
NKX2-3Q8TAU0 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC29.31■■■□□ 2.28
NKX2-3Q8TAU0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms