Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
USHBP1Q8N6Y0 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
USHBP1Q8N6Y0 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC33.12■■■□□ 2.89
USHBP1Q8N6Y0 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC33.12■■■□□ 2.89
USHBP1Q8N6Y0 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
USHBP1Q8N6Y0 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC33.1■■■□□ 2.89
USHBP1Q8N6Y0 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC33.1■■■□□ 2.89
USHBP1Q8N6Y0 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC33.1■■■□□ 2.89
USHBP1Q8N6Y0 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
USHBP1Q8N6Y0 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
USHBP1Q8N6Y0 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC33.08■■■□□ 2.89
USHBP1Q8N6Y0 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC33.08■■■□□ 2.89
USHBP1Q8N6Y0 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.89
USHBP1Q8N6Y0 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC33.07■■■□□ 2.88
USHBP1Q8N6Y0 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC33.07■■■□□ 2.88
USHBP1Q8N6Y0 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
USHBP1Q8N6Y0 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC33.06■■■□□ 2.88
USHBP1Q8N6Y0 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC33.06■■■□□ 2.88
USHBP1Q8N6Y0 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
USHBP1Q8N6Y0 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC33.05■■■□□ 2.88
USHBP1Q8N6Y0 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC33.04■■■□□ 2.88
USHBP1Q8N6Y0 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
USHBP1Q8N6Y0 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC33.04■■■□□ 2.88
USHBP1Q8N6Y0 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
USHBP1Q8N6Y0 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC33.03■■■□□ 2.88
USHBP1Q8N6Y0 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
USHBP1Q8N6Y0 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
USHBP1Q8N6Y0 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
USHBP1Q8N6Y0 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
USHBP1Q8N6Y0 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
USHBP1Q8N6Y0 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
USHBP1Q8N6Y0 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC33.02■■■□□ 2.88
USHBP1Q8N6Y0 AC010980.1-201ENST00000587192 1142 ntBASIC33.02■■■□□ 2.88
USHBP1Q8N6Y0 AL451085.2-201ENST00000605085 799 ntBASIC33.02■■■□□ 2.88
USHBP1Q8N6Y0 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
USHBP1Q8N6Y0 PFN2-211ENST00000489155 636 ntTSL 4 BASIC33.01■■■□□ 2.87
USHBP1Q8N6Y0 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC33■■■□□ 2.87
USHBP1Q8N6Y0 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC33■■■□□ 2.87
USHBP1Q8N6Y0 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC33■■■□□ 2.87
USHBP1Q8N6Y0 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC33■■■□□ 2.87
USHBP1Q8N6Y0 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
USHBP1Q8N6Y0 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC32.99■■■□□ 2.87
USHBP1Q8N6Y0 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
USHBP1Q8N6Y0 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC32.99■■■□□ 2.87
USHBP1Q8N6Y0 KRT8P33-201ENST00000508125 1423 ntBASIC32.98■■■□□ 2.87
USHBP1Q8N6Y0 MIR3960-201ENST00000583311 91 ntBASIC32.98■■■□□ 2.87
USHBP1Q8N6Y0 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC32.98■■■□□ 2.87
USHBP1Q8N6Y0 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC32.98■■■□□ 2.87
USHBP1Q8N6Y0 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC32.97■■■□□ 2.87
USHBP1Q8N6Y0 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC32.97■■■□□ 2.87
USHBP1Q8N6Y0 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
USHBP1Q8N6Y0 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC32.97■■■□□ 2.87
USHBP1Q8N6Y0 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC32.97■■■□□ 2.87
USHBP1Q8N6Y0 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC32.97■■■□□ 2.87
USHBP1Q8N6Y0 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC32.97■■■□□ 2.87
USHBP1Q8N6Y0 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC32.96■■■□□ 2.87
USHBP1Q8N6Y0 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
USHBP1Q8N6Y0 BHLHE23-202ENST00000612929 1109 ntBASIC32.96■■■□□ 2.87
USHBP1Q8N6Y0 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC32.96■■■□□ 2.87
USHBP1Q8N6Y0 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC32.95■■■□□ 2.87
USHBP1Q8N6Y0 AL359504.2-201ENST00000605506 1601 ntBASIC32.95■■■□□ 2.87
USHBP1Q8N6Y0 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
USHBP1Q8N6Y0 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.87
USHBP1Q8N6Y0 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC32.95■■■□□ 2.87
USHBP1Q8N6Y0 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC32.95■■■□□ 2.87
USHBP1Q8N6Y0 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.87
USHBP1Q8N6Y0 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC32.95■■■□□ 2.86
USHBP1Q8N6Y0 ST7-202ENST00000323984 2142 ntTSL 5 BASIC32.95■■■□□ 2.86
USHBP1Q8N6Y0 ST7-207ENST00000393449 2127 ntTSL 5 BASIC32.95■■■□□ 2.86
USHBP1Q8N6Y0 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC32.94■■■□□ 2.86
USHBP1Q8N6Y0 AL035685.1-201ENST00000636663 812 ntBASIC32.94■■■□□ 2.86
USHBP1Q8N6Y0 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC32.93■■■□□ 2.86
USHBP1Q8N6Y0 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC32.92■■■□□ 2.86
USHBP1Q8N6Y0 BEX3-202ENST00000372634 753 ntTSL 2 BASIC32.92■■■□□ 2.86
USHBP1Q8N6Y0 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC32.92■■■□□ 2.86
USHBP1Q8N6Y0 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC32.91■■■□□ 2.86
USHBP1Q8N6Y0 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
USHBP1Q8N6Y0 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC32.91■■■□□ 2.86
USHBP1Q8N6Y0 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC32.91■■■□□ 2.86
USHBP1Q8N6Y0 PVT1_1.1-201ENST00000615125 194 ntBASIC32.9■■■□□ 2.86
USHBP1Q8N6Y0 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC32.9■■■□□ 2.86
USHBP1Q8N6Y0 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC32.9■■■□□ 2.86
USHBP1Q8N6Y0 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC32.9■■■□□ 2.86
USHBP1Q8N6Y0 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC32.89■■■□□ 2.86
USHBP1Q8N6Y0 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC32.89■■■□□ 2.86
USHBP1Q8N6Y0 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
USHBP1Q8N6Y0 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC32.88■■■□□ 2.85
USHBP1Q8N6Y0 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
USHBP1Q8N6Y0 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
USHBP1Q8N6Y0 MIR6765-201ENST00000614092 87 ntBASIC32.88■■■□□ 2.85
USHBP1Q8N6Y0 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
USHBP1Q8N6Y0 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
USHBP1Q8N6Y0 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
USHBP1Q8N6Y0 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC32.87■■■□□ 2.85
USHBP1Q8N6Y0 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
USHBP1Q8N6Y0 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC32.85■■■□□ 2.85
USHBP1Q8N6Y0 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
USHBP1Q8N6Y0 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
USHBP1Q8N6Y0 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC32.85■■■□□ 2.85
USHBP1Q8N6Y0 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms