Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC14.1□□□□□ -0.15
UBR4Q5T4S7 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
UBR4Q5T4S7 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
UBR4Q5T4S7 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
UBR4Q5T4S7 LONRF2P2-201ENST00000439212 571 ntBASIC14.09□□□□□ -0.15
UBR4Q5T4S7 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
UBR4Q5T4S7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC14.09□□□□□ -0.15
UBR4Q5T4S7 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
UBR4Q5T4S7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC14.09□□□□□ -0.15
UBR4Q5T4S7 HYI-210ENST00000486909 905 ntTSL 5 BASIC14.08□□□□□ -0.16
UBR4Q5T4S7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC14.08□□□□□ -0.16
UBR4Q5T4S7 AL031432.3-201ENST00000607698 485 ntBASIC14.08□□□□□ -0.16
UBR4Q5T4S7 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
UBR4Q5T4S7 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
UBR4Q5T4S7 AC110285.7-201ENST00000624417 1536 ntBASIC14.08□□□□□ -0.16
UBR4Q5T4S7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
UBR4Q5T4S7 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC14.08□□□□□ -0.16
UBR4Q5T4S7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC14.08□□□□□ -0.16
UBR4Q5T4S7 SUDS3P1-201ENST00000505831 966 ntBASIC14.07□□□□□ -0.16
UBR4Q5T4S7 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC14.07□□□□□ -0.16
UBR4Q5T4S7 MIR4466-201ENST00000606121 54 ntBASIC14.07□□□□□ -0.16
UBR4Q5T4S7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC14.07□□□□□ -0.16
UBR4Q5T4S7 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
UBR4Q5T4S7 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
UBR4Q5T4S7 KRT16P3-201ENST00000439127 1283 ntBASIC14.06□□□□□ -0.16
UBR4Q5T4S7 SRR-208ENST00000576848 588 ntTSL 4 BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 AC066615.1-201ENST00000640911 628 ntBASIC14.06□□□□□ -0.16
UBR4Q5T4S7 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 AC126177.7-201ENST00000547904 679 ntBASIC14.06□□□□□ -0.16
UBR4Q5T4S7 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC14.06□□□□□ -0.16
UBR4Q5T4S7 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC14.05□□□□□ -0.16
UBR4Q5T4S7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC14.05□□□□□ -0.16
UBR4Q5T4S7 AC097381.1-201ENST00000429019 1296 ntBASIC14.05□□□□□ -0.16
UBR4Q5T4S7 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
UBR4Q5T4S7 ABHD17AP1-201ENST00000358206 933 ntBASIC14.05□□□□□ -0.16
UBR4Q5T4S7 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 AC105265.2-201ENST00000467189 838 ntBASIC14.04□□□□□ -0.16
UBR4Q5T4S7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 ID1-201ENST00000376105 1233 ntBASIC14.04□□□□□ -0.16
UBR4Q5T4S7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 AC018755.3-202ENST00000596210 929 ntBASIC14.04□□□□□ -0.16
UBR4Q5T4S7 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC14.04□□□□□ -0.16
UBR4Q5T4S7 AC142381.2-201ENST00000566120 298 ntBASIC14.03□□□□□ -0.16
UBR4Q5T4S7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
UBR4Q5T4S7 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
UBR4Q5T4S7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
UBR4Q5T4S7 AC241377.3-202ENST00000626088 1088 ntBASIC14.03□□□□□ -0.16
UBR4Q5T4S7 AC241585.3-202ENST00000628937 1088 ntBASIC14.03□□□□□ -0.16
UBR4Q5T4S7 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
UBR4Q5T4S7 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC14.03□□□□□ -0.16
UBR4Q5T4S7 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
UBR4Q5T4S7 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
UBR4Q5T4S7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
UBR4Q5T4S7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
UBR4Q5T4S7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
UBR4Q5T4S7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC14.02□□□□□ -0.17
UBR4Q5T4S7 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC14.02□□□□□ -0.17
UBR4Q5T4S7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC14.02□□□□□ -0.17
UBR4Q5T4S7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
UBR4Q5T4S7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC14.01□□□□□ -0.17
UBR4Q5T4S7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
UBR4Q5T4S7 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
UBR4Q5T4S7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC14.01□□□□□ -0.17
UBR4Q5T4S7 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
UBR4Q5T4S7 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
UBR4Q5T4S7 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
UBR4Q5T4S7 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
UBR4Q5T4S7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
UBR4Q5T4S7 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
UBR4Q5T4S7 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
UBR4Q5T4S7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
UBR4Q5T4S7 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
UBR4Q5T4S7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC13.99□□□□□ -0.17
UBR4Q5T4S7 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
UBR4Q5T4S7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC13.99□□□□□ -0.17
UBR4Q5T4S7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC13.99□□□□□ -0.17
UBR4Q5T4S7 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
UBR4Q5T4S7 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC13.99□□□□□ -0.17
UBR4Q5T4S7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
UBR4Q5T4S7 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
UBR4Q5T4S7 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
UBR4Q5T4S7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
UBR4Q5T4S7 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
UBR4Q5T4S7 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms