Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YKL018C-AYKL018C-A 300 nt8.35□□□□□ -1.07
RPN11P43588 ECM19YLR390W 339 nt8.35□□□□□ -1.07
RPN11P43588 SPT3YDR392W 1014 nt8.34□□□□□ -1.07
RPN11P43588 PTC7YHR076W 1032 nt8.34□□□□□ -1.07
RPN11P43588 MTC2YKL098W 1074 nt8.34□□□□□ -1.07
RPN11P43588 SWD1YAR003W 1281 nt8.34□□□□□ -1.07
RPN11P43588 SHP1YBL058W 1272 nt8.34□□□□□ -1.07
RPN11P43588 TPO4YOR273C 1980 nt8.33□□□□□ -1.08
RPN11P43588 HST3YOR025W 1344 nt8.33□□□□□ -1.08
RPN11P43588 VBA5YKR105C 1749 nt8.33□□□□□ -1.08
RPN11P43588 ENV7YPL236C 1095 nt8.33□□□□□ -1.08
RPN11P43588 DOT1YDR440W 1749 nt8.32□□□□□ -1.08
RPN11P43588 PDC5YLR134W 1692 nt8.31□□□□□ -1.08
RPN11P43588 RPL10YLR075W 666 nt8.31□□□□□ -1.08
RPN11P43588 RTC2YBR147W 891 nt8.31□□□□□ -1.08
RPN11P43588 NUP57YGR119C 1626 nt8.3□□□□□ -1.08
RPN11P43588 YRB2YIL063C 984 nt8.3□□□□□ -1.08
RPN11P43588 SNA3YJL151C 402 nt8.3□□□□□ -1.08
RPN11P43588 SPG5YMR191W 1122 nt8.3□□□□□ -1.08
RPN11P43588 CCT8YJL008C 1707 nt8.29□□□□□ -1.08
RPN11P43588 YDR327WYDR327W 327 nt8.29□□□□□ -1.08
RPN11P43588 HNM1YGL077C 1692 nt8.29□□□□□ -1.08
RPN11P43588 MAE1YKL029C 2010 nt8.29□□□□□ -1.08
RPN11P43588 YHR213W-BYHR213W-B 300 nt8.28□□□□□ -1.08
RPN11P43588 DOT5YIL010W 648 nt8.28□□□□□ -1.08
RPN11P43588 YAR064WYAR064W 300 nt8.28□□□□□ -1.08
RPN11P43588 YNL017CYNL017C 339 nt8.27□□□□□ -1.09
RPN11P43588 RPN11YFR004W 921 nt8.26□□□□□ -1.09
RPN11P43588 YGL260WYGL260W 231 nt8.26□□□□□ -1.09
RPN11P43588 PSR2YLR019W 1194 nt8.26□□□□□ -1.09
RPN11P43588 RSC30YHR056C 2652 nt8.26□□□□□ -1.09
RPN11P43588 HED1YDR014W-A 489 nt8.25□□□□□ -1.09
RPN11P43588 HPT1YDR399W 666 nt8.25□□□□□ -1.09
RPN11P43588 TSR3YOR006C 942 nt8.25□□□□□ -1.09
RPN11P43588 YLL066CYLL066C 3618 nt8.24□□□□□ -1.09
RPN11P43588 YLL067CYLL067C 3618 nt8.24□□□□□ -1.09
RPN11P43588 TPI1YDR050C 747 nt8.24□□□□□ -1.09
RPN11P43588 BUD32YGR262C 786 nt8.24□□□□□ -1.09
RPN11P43588 YHK8YHR048W 1545 nt8.24□□□□□ -1.09
RPN11P43588 GTS1YGL181W 1191 nt8.23□□□□□ -1.09
RPN11P43588 YHR213W-AYHR213W-A 234 nt8.23□□□□□ -1.09
RPN11P43588 SRL2YLR082C 1179 nt8.23□□□□□ -1.09
RPN11P43588 CTA1YDR256C 1548 nt8.23□□□□□ -1.09
RPN11P43588 RPL31BYLR406C 342 nt8.22□□□□□ -1.09
RPN11P43588 CTF19YPL018W 1110 nt8.22□□□□□ -1.09
RPN11P43588 THR1YHR025W 1074 nt8.21□□□□□ -1.1
RPN11P43588 YLR126CYLR126C 756 nt8.21□□□□□ -1.1
RPN11P43588 RUP1YOR138C 2016 nt8.2□□□□□ -1.1
RPN11P43588 GAT4YIR013C 366 nt8.2□□□□□ -1.1
RPN11P43588 MSO1YNR049C 633 nt8.2□□□□□ -1.1
RPN11P43588 RVB2YPL235W 1416 nt8.2□□□□□ -1.1
RPN11P43588 TCB1YOR086C 3561 nt8.19□□□□□ -1.1
RPN11P43588 TMA46YOR091W 1038 nt8.19□□□□□ -1.1
RPN11P43588 PTC3YBL056W 1407 nt8.19□□□□□ -1.1
RPN11P43588 YJR154WYJR154W 1041 nt8.18□□□□□ -1.1
RPN11P43588 MDH2YOL126C 1134 nt8.18□□□□□ -1.1
RPN11P43588 YBL113CYBL113C 2379 nt8.18□□□□□ -1.1
RPN11P43588 FCP1YMR277W 2199 nt8.17□□□□□ -1.1
RPN11P43588 YDL218WYDL218W 954 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)BtD(GUC)B 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)DtD(GUC)D 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)G1tD(GUC)G1 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)G2tD(GUC)G2 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)I1tD(GUC)I1 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)I2tD(GUC)I2 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)J1tD(GUC)J1 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)J2tD(GUC)J2 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)J3tD(GUC)J3 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)J4tD(GUC)J4 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)KtD(GUC)K 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)L1tD(GUC)L1 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)L2tD(GUC)L2 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)MtD(GUC)M 72 nt8.16□□□□□ -1.1
RPN11P43588 tD(GUC)OtD(GUC)O 72 nt8.16□□□□□ -1.1
RPN11P43588 KSH1YNL024C-A 219 nt8.16□□□□□ -1.1
RPN11P43588 KTR3YBR205W 1215 nt8.16□□□□□ -1.1
RPN11P43588 GID7YCL039W 2238 nt8.16□□□□□ -1.1
RPN11P43588 HEM2YGL040C 1029 nt8.15□□□□□ -1.1
RPN11P43588 SDH4YDR178W 546 nt8.14□□□□□ -1.11
RPN11P43588 ASK1YKL052C 879 nt8.14□□□□□ -1.11
RPN11P43588 LIP5YOR196C 1245 nt8.14□□□□□ -1.11
RPN11P43588 MET8YBR213W 825 nt8.14□□□□□ -1.11
RPN11P43588 SKS1YPL026C 1509 nt8.13□□□□□ -1.11
RPN11P43588 GLC8YMR311C 690 nt8.12□□□□□ -1.11
RPN11P43588 PHO85YPL031C 918 nt8.12□□□□□ -1.11
RPN11P43588 CDC19YAL038W 1503 nt8.12□□□□□ -1.11
RPN11P43588 RSC9YML127W 1746 nt8.12□□□□□ -1.11
RPN11P43588 RHB1YCR027C 630 nt8.11□□□□□ -1.11
RPN11P43588 PRS2YER099C 957 nt8.11□□□□□ -1.11
RPN11P43588 YNL285WYNL285W 372 nt8.11□□□□□ -1.11
RPN11P43588 MNS1YJR131W 1650 nt8.1□□□□□ -1.11
RPN11P43588 MHP1YJL042W 4197 nt8.09□□□□□ -1.11
RPN11P43588 PNP1YLR209C 936 nt8.09□□□□□ -1.11
RPN11P43588 COQ1YBR003W 1422 nt8.09□□□□□ -1.11
RPN11P43588 DIA4YHR011W 1341 nt8.08□□□□□ -1.12
RPN11P43588 GCV3YAL044C 513 nt8.08□□□□□ -1.12
RPN11P43588 YDR015CYDR015C 240 nt8.07□□□□□ -1.12
RPN11P43588 SSP120YLR250W 705 nt8.07□□□□□ -1.12
RPN11P43588 PTC4YBR125C 1182 nt8.07□□□□□ -1.12
RPN11P43588 Q0010Q0010 387 nt8.07□□□□□ -1.12
Retrieved 100 of 7,029 protein–RNA pairs in 40.2 ms