Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CXCL1P09341 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.12■□□□□ 0.65
CXCL1P09341 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CXCL1P09341 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL1P09341 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL1P09341 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL1P09341 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL1P09341 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CXCL1P09341 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL1P09341 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL1P09341 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL1P09341 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CXCL1P09341 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.09■□□□□ 0.65
CXCL1P09341 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL1P09341 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL1P09341 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL1P09341 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CXCL1P09341 AP004833.2-201ENST00000532228 1454 ntBASIC19.09■□□□□ 0.65
CXCL1P09341 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CXCL1P09341 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CXCL1P09341 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CXCL1P09341 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CXCL1P09341 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
CXCL1P09341 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CXCL1P09341 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.07■□□□□ 0.64
CXCL1P09341 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CXCL1P09341 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.07■□□□□ 0.64
CXCL1P09341 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CXCL1P09341 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CXCL1P09341 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CXCL1P09341 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CXCL1P09341 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
CXCL1P09341 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CXCL1P09341 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CXCL1P09341 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.06■□□□□ 0.64
CXCL1P09341 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CXCL1P09341 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
CXCL1P09341 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CXCL1P09341 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CXCL1P09341 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CXCL1P09341 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CXCL1P09341 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CXCL1P09341 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CXCL1P09341 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
CXCL1P09341 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CXCL1P09341 AL133380.1-201ENST00000506013 324 ntBASIC19.05■□□□□ 0.64
CXCL1P09341 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CXCL1P09341 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CXCL1P09341 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.05■□□□□ 0.64
CXCL1P09341 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CXCL1P09341 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.04■□□□□ 0.64
CXCL1P09341 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CXCL1P09341 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CXCL1P09341 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CXCL1P09341 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CXCL1P09341 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CXCL1P09341 AL139125.2-201ENST00000623134 1869 ntBASIC19.03■□□□□ 0.64
CXCL1P09341 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CXCL1P09341 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CXCL1P09341 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC19.03■□□□□ 0.64
CXCL1P09341 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CXCL1P09341 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CXCL1P09341 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CXCL1P09341 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.02■□□□□ 0.64
CXCL1P09341 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CXCL1P09341 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CXCL1P09341 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.02■□□□□ 0.64
CXCL1P09341 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.02■□□□□ 0.64
CXCL1P09341 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CXCL1P09341 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CXCL1P09341 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CXCL1P09341 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.02■□□□□ 0.63
CXCL1P09341 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CXCL1P09341 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CXCL1P09341 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CXCL1P09341 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL1P09341 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
CXCL1P09341 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL1P09341 KLF16-203ENST00000592313 508 ntTSL 3 BASIC19.01■□□□□ 0.63
CXCL1P09341 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL1P09341 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL1P09341 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL1P09341 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL1P09341 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19■□□□□ 0.63
CXCL1P09341 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19■□□□□ 0.63
CXCL1P09341 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC19■□□□□ 0.63
CXCL1P09341 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CXCL1P09341 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19■□□□□ 0.63
CXCL1P09341 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CXCL1P09341 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL1P09341 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL1P09341 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL1P09341 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL1P09341 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL1P09341 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL1P09341 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL1P09341 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CXCL1P09341 AC142381.3-201ENST00000568208 1670 ntBASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms