Protein–RNA interactions for Protein: P04155

TFF1, Trefoil factor 1, humanhuman

Predictions only

Length 84 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF1P04155 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.81■□□□□ 0.92
TFF1P04155 WHAMMP3-201ENST00000611636 1609 ntBASIC20.81■□□□□ 0.92
TFF1P04155 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TFF1P04155 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
TFF1P04155 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TFF1P04155 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TFF1P04155 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TFF1P04155 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.8■□□□□ 0.92
TFF1P04155 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TFF1P04155 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TFF1P04155 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TFF1P04155 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TFF1P04155 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
TFF1P04155 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
TFF1P04155 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TFF1P04155 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.79■□□□□ 0.92
TFF1P04155 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.79■□□□□ 0.92
TFF1P04155 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TFF1P04155 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.79■□□□□ 0.92
TFF1P04155 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
TFF1P04155 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TFF1P04155 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
TFF1P04155 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TFF1P04155 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TFF1P04155 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TFF1P04155 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TFF1P04155 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.78■□□□□ 0.92
TFF1P04155 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TFF1P04155 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TFF1P04155 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TFF1P04155 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TFF1P04155 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
TFF1P04155 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TFF1P04155 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
TFF1P04155 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TFF1P04155 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.77■□□□□ 0.91
TFF1P04155 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.76■□□□□ 0.91
TFF1P04155 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TFF1P04155 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.76■□□□□ 0.91
TFF1P04155 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TFF1P04155 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 AL359258.2-201ENST00000564063 1566 ntBASIC20.75■□□□□ 0.91
TFF1P04155 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TFF1P04155 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.75■□□□□ 0.91
TFF1P04155 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
TFF1P04155 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
TFF1P04155 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.74■□□□□ 0.91
TFF1P04155 AP004609.3-201ENST00000610705 1884 ntBASIC20.74■□□□□ 0.91
TFF1P04155 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TFF1P04155 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TFF1P04155 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
TFF1P04155 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TFF1P04155 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
TFF1P04155 MIR4449-201ENST00000578365 66 ntBASIC20.73■□□□□ 0.91
TFF1P04155 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TFF1P04155 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TFF1P04155 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TFF1P04155 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TFF1P04155 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TFF1P04155 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TFF1P04155 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TFF1P04155 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TFF1P04155 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TFF1P04155 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TFF1P04155 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
TFF1P04155 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TFF1P04155 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TFF1P04155 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TFF1P04155 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.7■□□□□ 0.9
TFF1P04155 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TFF1P04155 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.7■□□□□ 0.9
TFF1P04155 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.7■□□□□ 0.9
TFF1P04155 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
TFF1P04155 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.7■□□□□ 0.9
TFF1P04155 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TFF1P04155 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TFF1P04155 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.69■□□□□ 0.9
TFF1P04155 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.69■□□□□ 0.9
TFF1P04155 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TFF1P04155 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TFF1P04155 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.69■□□□□ 0.9
TFF1P04155 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TFF1P04155 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TFF1P04155 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.68■□□□□ 0.9
TFF1P04155 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.68■□□□□ 0.9
TFF1P04155 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.68■□□□□ 0.9
TFF1P04155 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms