Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ACTR1A-201ENST00000369905 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.431e-10■■■■■ 241.2
SF3B1O75533 LINC00969-331ENST00000630863 954 ntTSL 512.31□□□□□ -0.441e-10■■■■■ 241.2
SF3B1O75533 NAGA-202ENST00000402937 1869 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.451e-10■■■■■ 241.2
SF3B1O75533 EEF1G-204ENST00000532986 578 ntTSL 412.24□□□□□ -0.451e-10■■■■■ 241.2
SF3B1O75533 TRAF3-201ENST00000347662 7700 ntTSL 5 BASIC12.12□□□□□ -0.471e-10■■■■■ 241.2
SF3B1O75533 NAGA-201ENST00000396398 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.481e-10■■■■■ 241.2
SF3B1O75533 EEF1G-202ENST00000524420 557 ntTSL 412.06□□□□□ -0.481e-10■■■■■ 241.2
SF3B1O75533 WDR41-201ENST00000296679 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.482e-20■■■■■ 241.2
SF3B1O75533 NARS-201ENST00000256854 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.481e-10■■■■■ 241.2
SF3B1O75533 NARS-204ENST00000586807 1608 ntTSL 211.98□□□□□ -0.491e-10■■■■■ 241.2
SF3B1O75533 MAN2B1-206ENST00000466794 3685 ntTSL 211.96□□□□□ -0.491e-10■■■■■ 241.2
SF3B1O75533 LHX6-203ENST00000373755 3384 ntTSL 1 (best) BASIC11.94□□□□□ -0.51e-10■■■■■ 241.2
SF3B1O75533 FLT4-206ENST00000502649 4140 ntTSL 1 (best) BASIC11.92□□□□□ -0.51e-10■■■■■ 241.2
SF3B1O75533 RNF215-202ENST00000332468 8141 ntTSL 511.89□□□□□ -0.511e-10■■■■■ 241.2
SF3B1O75533 LHX6-202ENST00000373754 3278 ntTSL 1 (best) BASIC11.78□□□□□ -0.521e-10■■■■■ 241.2
SF3B1O75533 ACTR1A-205ENST00000487599 2726 ntTSL 5 BASIC11.77□□□□□ -0.521e-10■■■■■ 241.2
SF3B1O75533 PTPN2-201ENST00000309660 3467 ntTSL 1 (best) BASIC11.76□□□□□ -0.531e-10■■■■■ 241.2
SF3B1O75533 NAGA-203ENST00000403363 1856 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.541e-10■■■■■ 241.2
SF3B1O75533 LHX6-206ENST00000482062 918 ntTSL 2 BASIC11.65□□□□□ -0.541e-10■■■■■ 241.2
SF3B1O75533 EPB41L2-208ENST00000524581 3090 ntTSL 1 (best) BASIC11.62□□□□□ -0.551e-10■■■■■ 241.2
SF3B1O75533 AHCYL2-204ENST00000461161 564 ntTSL 411.61□□□□□ -0.551e-10■■■■■ 241.2
SF3B1O75533 PHC1-201ENST00000433083 5033 ntTSL 1 (best) BASIC11.59□□□□□ -0.551e-10■■■■■ 241.2
SF3B1O75533 WSB2-204ENST00000536602 1008 ntTSL 211.58□□□□□ -0.561e-10■■■■■ 241.2
SF3B1O75533 LINC00969-278ENST00000626870 851 ntTSL 5 BASIC11.46□□□□□ -0.571e-10■■■■■ 241.2
SF3B1O75533 LINC00969-272ENST00000626569 857 ntTSL 5 BASIC11.46□□□□□ -0.571e-10■■■■■ 241.2
SF3B1O75533 LINC00969-225ENST00000594715 729 ntTSL 511.44□□□□□ -0.581e-10■■■■■ 241.2
SF3B1O75533 TTC12-219ENST00000529221 2315 ntAPPRIS P3 TSL 2 BASIC11.38□□□□□ -0.591e-10■■■■■ 241.2
SF3B1O75533 TM4SF19-202ENST00000440822 500 ntTSL 311.36□□□□□ -0.591e-10■■■■■ 241.2
SF3B1O75533 TMEM175-205ENST00000504180 673 ntTSL 511.35□□□□□ -0.591e-10■■■■■ 241.2
SF3B1O75533 CTNNBL1-210ENST00000628103 1958 ntTSL 2 BASIC11.32□□□□□ -0.61e-10■■■■■ 241.2
SF3B1O75533 MYO18A-201ENST00000527312 573 ntTSL 211.29□□□□□ -0.61e-10■■■■■ 241.2
SF3B1O75533 PLCG1-210ENST00000483646 591 ntTSL 311.28□□□□□ -0.61e-10■■■■■ 241.2
SF3B1O75533 TTC12-210ENST00000483239 2240 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.61e-10■■■■■ 241.2
SF3B1O75533 MESD-207ENST00000619987 3978 ntTSL 1 (best)11.27□□□□□ -0.61e-10■■■■■ 241.2
SF3B1O75533 MICAL2-203ENST00000379612 6625 ntTSL 1 (best) BASIC11.22□□□□□ -0.611e-10■■■■■ 241.2
SF3B1O75533 TTC12-212ENST00000494714 2520 ntTSL 1 (best)11.13□□□□□ -0.631e-10■■■■■ 241.2
SF3B1O75533 WSB2-210ENST00000543218 935 ntTSL 211.09□□□□□ -0.631e-10■■■■■ 241.2
SF3B1O75533 MYO18A-211ENST00000531438 565 ntTSL 411.04□□□□□ -0.641e-10■■■■■ 241.2
SF3B1O75533 CTNNBL1-202ENST00000373469 1130 ntTSL 1 (best) BASIC11.02□□□□□ -0.651e-10■■■■■ 241.2
SF3B1O75533 CLIP1-213ENST00000540338 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.651e-10■■■■■ 241.2
SF3B1O75533 PTPN2-203ENST00000353319 1542 ntTSL 1 (best) BASIC10.93□□□□□ -0.661e-10■■■■■ 241.2
SF3B1O75533 AL445248.1-201ENST00000366152 624 ntTSL 3 BASIC10.91□□□□□ -0.661e-10■■■■■ 241.2
SF3B1O75533 UQCC1-220ENST00000495752 410 ntTSL 510.88□□□□□ -0.671e-10■■■■■ 241.2
SF3B1O75533 TTC12-201ENST00000314756 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.681e-10■■■■■ 241.2
SF3B1O75533 PARD6G-AS1-202ENST00000586421 3333 ntTSL 2 BASIC10.79□□□□□ -0.681e-10■■■■■ 241.2
SF3B1O75533 LINC00969-216ENST00000451228 604 ntTSL 310.78□□□□□ -0.681e-10■■■■■ 241.2
SF3B1O75533 PTPN2-208ENST00000589216 646 ntTSL 310.78□□□□□ -0.681e-10■■■■■ 241.2
SF3B1O75533 MICAL2-218ENST00000528931 2868 ntTSL 1 (best)10.74□□□□□ -0.691e-10■■■■■ 241.2
SF3B1O75533 CLIP1-201ENST00000302528 5833 ntAPPRIS P4 TSL 5 BASIC10.73□□□□□ -0.691e-10■■■■■ 241.2
SF3B1O75533 EPB41L2-213ENST00000526782 424 ntTSL 210.72□□□□□ -0.691e-10■■■■■ 241.2
SF3B1O75533 CLN8-201ENST00000331222 7169 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.711e-10■■■■■ 241.2
SF3B1O75533 LINC00969-275ENST00000626677 378 ntTSL 510.63□□□□□ -0.711e-10■■■■■ 241.2
SF3B1O75533 MCM3AP-AS1-206ENST00000455567 2325 ntTSL 1 (best)10.51□□□□□ -0.731e-10■■■■■ 241.2
SF3B1O75533 PHC1-214ENST00000544916 3626 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.741e-10■■■■■ 241.2
SF3B1O75533 WDR41-213ENST00000509701 949 ntTSL 210.34□□□□□ -0.752e-20■■■■■ 241.2
SF3B1O75533 PTPN2-210ENST00000591115 1648 ntTSL 1 (best) BASIC10.32□□□□□ -0.761e-10■■■■■ 241.2
SF3B1O75533 TSHZ1-201ENST00000322038 4992 ntTSL 1 (best) BASIC10.27□□□□□ -0.761e-10■■■■■ 241.2
SF3B1O75533 LINC00969-274ENST00000626617 1014 ntTSL 510.15□□□□□ -0.781e-10■■■■■ 241.2
SF3B1O75533 PHC1-206ENST00000539063 642 ntTSL 310.15□□□□□ -0.781e-10■■■■■ 241.2
SF3B1O75533 ZNF766-205ENST00000595149 552 ntTSL 410.13□□□□□ -0.791e-10■■■■■ 241.2
SF3B1O75533 CYP20A1-202ENST00000428265 648 ntTSL 310.12□□□□□ -0.791e-10■■■■■ 241.2
SF3B1O75533 ACTR1A-204ENST00000481044 689 ntTSL 210.1□□□□□ -0.791e-10■■■■■ 241.2
SF3B1O75533 LINC00969-327ENST00000630417 918 ntTSL 59.95□□□□□ -0.821e-10■■■■■ 241.2
SF3B1O75533 PHC1-208ENST00000540574 3869 ntTSL 1 (best)9.86□□□□□ -0.831e-10■■■■■ 241.2
SF3B1O75533 ZNF780B-201ENST00000221355 3538 ntTSL 2 BASIC9.8□□□□□ -0.841e-10■■■■■ 241.2
SF3B1O75533 ZNF780B-206ENST00000598845 401 ntTSL 3 BASIC9.79□□□□□ -0.841e-10■■■■■ 241.2
SF3B1O75533 UQCC1-218ENST00000491040 1017 ntTSL 1 (best)9.71□□□□□ -0.861e-10■■■■■ 241.2
SF3B1O75533 MICAL2-221ENST00000530691 6307 ntTSL 1 (best)9.7□□□□□ -0.861e-10■■■■■ 241.2
SF3B1O75533 TRIM52-205ENST00000611618 3466 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.861e-10■■■■■ 241.2
SF3B1O75533 MCM3AP-AS1-201ENST00000414659 2539 ntTSL 2 BASIC9.6□□□□□ -0.871e-10■■■■■ 241.2
SF3B1O75533 TATDN2-202ENST00000426850 689 ntTSL 29.56□□□□□ -0.881e-10■■■■■ 241.2
SF3B1O75533 TRIM52-201ENST00000503005 370 ntTSL 59.52□□□□□ -0.891e-10■■■■■ 241.2
SF3B1O75533 LINC00969-293ENST00000627562 1184 ntTSL 59.42□□□□□ -0.91e-10■■■■■ 241.2
SF3B1O75533 UQCC1-207ENST00000397553 566 ntTSL 59.38□□□□□ -0.911e-10■■■■■ 241.2
SF3B1O75533 INTS6-209ENST00000483288 597 ntTSL 49.38□□□□□ -0.911e-10■■■■■ 241.2
SF3B1O75533 AC015909.1-201ENST00000509943 839 ntTSL 3 BASIC9.33□□□□□ -0.921e-10■■■■■ 241.2
SF3B1O75533 CAST-244ENST00000515663 1473 ntTSL 2 BASIC9.28□□□□□ -0.921e-10■■■■■ 241.2
SF3B1O75533 LINC00969-259ENST00000625776 911 ntTSL 59.23□□□□□ -0.931e-10■■■■■ 241.2
SF3B1O75533 NARS-210ENST00000589314 1036 ntTSL 59.17□□□□□ -0.941e-10■■■■■ 241.2
SF3B1O75533 TRAF3-209ENST00000560463 701 ntTSL 39.1□□□□□ -0.951e-10■■■■■ 241.2
SF3B1O75533 INTS6-218ENST00000491997 560 ntTSL 49.08□□□□□ -0.961e-10■■■■■ 241.2
SF3B1O75533 INTS6-214ENST00000488009 452 ntTSL 58.89□□□□□ -0.991e-10■■■■■ 241.2
SF3B1O75533 CLIP1-218ENST00000545889 4633 ntTSL 5 BASIC8.87□□□□□ -0.991e-10■■■■■ 241.2
SF3B1O75533 PLA2G15-210ENST00000566978 584 ntTSL 28.85□□□□□ -0.991e-10■■■■■ 241.2
SF3B1O75533 LINC00969-208ENST00000431767 486 ntTSL 58.8□□□□□ -11e-10■■■■■ 241.2
SF3B1O75533 LINC00969-304ENST00000628301 772 ntTSL 58.78□□□□□ -11e-10■■■■■ 241.2
SF3B1O75533 MCM3AP-AS1-207ENST00000588753 589 ntTSL 4 BASIC8.59□□□□□ -1.031e-10■■■■■ 241.2
SF3B1O75533 SOX6-210ENST00000528252 2707 ntAPPRIS ALT2 TSL 2 BASIC8.42□□□□□ -1.061e-10■■■■■ 241.2
SF3B1O75533 EPB41L2-206ENST00000452150 2994 ntTSL 1 (best)8.38□□□□□ -1.071e-10■■■■■ 241.2
SF3B1O75533 EPB41L2-228ENST00000531410 2926 ntTSL 5 BASIC8.37□□□□□ -1.071e-10■■■■■ 241.2
SF3B1O75533 LINC00969-288ENST00000627363 731 ntTSL 58.31□□□□□ -1.081e-10■■■■■ 241.2
SF3B1O75533 HLTF-207ENST00000493881 461 ntTSL 48.21□□□□□ -1.11e-10■■■■■ 241.2
SF3B1O75533 CAST-222ENST00000508579 1758 ntTSL 2 BASIC8.1□□□□□ -1.111e-10■■■■■ 241.2
SF3B1O75533 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.131e-10■■■■■ 241.2
SF3B1O75533 CTNNBL1-207ENST00000473857 2990 ntTSL 27.94□□□□□ -1.141e-10■■■■■ 241.2
SF3B1O75533 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.161e-10■■■■■ 241.2
SF3B1O75533 MIR1-1HG-201ENST00000370523 426 ntTSL 57.78□□□□□ -1.161e-10■■■■■ 241.2
SF3B1O75533 LINC00969-215ENST00000451216 405 ntTSL 57.76□□□□□ -1.171e-10■■■■■ 241.2
SF3B1O75533 LINC00969-317ENST00000629686 669 ntTSL 57.75□□□□□ -1.171e-10■■■■■ 241.2
SF3B1O75533 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.171e-10■■■■■ 241.2
Retrieved 100 of 46,956 protein–RNA pairs in 3791 ms