RNA–Protein interactions for RNA: ENST00000540574.5

PHC1-208, Transcript of polyhomeotic homolog 1, humanhuman

TSL 1 (best)

Gene PHC1, Length 3,869 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC1-208ENST00000540574 NISCHQ9Y2I1 1504 aa19.01■□□□□ 0.63
PHC1-208ENST00000540574 DCAF8L2P0C7V8 631 aa17.66■□□□□ 0.42
PHC1-208ENST00000540574 SHROOM4Q9ULL8 1493 aa17.51■□□□□ 0.39
PHC1-208ENST00000540574 SUPT5HO00267 1087 aaKnown RBP17.35■□□□□ 0.37
PHC1-208ENST00000540574 EHMT2Q96KQ7 1210 aa16.53■□□□□ 0.24
PHC1-208ENST00000540574 PCGF6Q9BYE7 350 aa16.25■□□□□ 0.19
PHC1-208ENST00000540574 FAM9AQ8IZU1 332 aaPredicted RBP16.25■□□□□ 0.19
PHC1-208ENST00000540574 CHIC1Q5VXU3 224 aa16.16■□□□□ 0.18
PHC1-208ENST00000540574 LOC105371045A0A1W2PR82 267 aa16.1■□□□□ 0.17
PHC1-208ENST00000540574 ZCCHC6Q5VYS8 1495 aaKnown RBP15.91■□□□□ 0.14
PHC1-208ENST00000540574 TRIM41Q8WV44 630 aa15.91■□□□□ 0.14
PHC1-208ENST00000540574 TTBK1Q5TCY1 1321 aaPredicted RBP15.91■□□□□ 0.14
PHC1-208ENST00000540574 PPARGC1BQ86YN6 1023 aaKnown RBP15.86■□□□□ 0.13
PHC1-208ENST00000540574 ABCC9O60706 1549 aa15.74■□□□□ 0.11
PHC1-208ENST00000540574 MYO15BQ96JP2 1530 aa15.71■□□□□ 0.11
PHC1-208ENST00000540574 HRCP23327 699 aa15.7■□□□□ 0.1
PHC1-208ENST00000540574 CCDC180Q9P1Z9 1646 aa15.64■□□□□ 0.09
PHC1-208ENST00000540574 RANGAP1P46060 587 aaPredicted RBP15.61■□□□□ 0.09
PHC1-208ENST00000540574 SCRIBQ14160 1630 aa15.51■□□□□ 0.07
PHC1-208ENST00000540574 TRIM26Q12899 539 aaPredicted RBP15.51■□□□□ 0.07
PHC1-208ENST00000540574 PABPN1Q86U42 306 aaKnown RBP eCLIP15.45■□□□□ 0.06
PHC1-208ENST00000540574 UBTFP17480 764 aaKnown RBP15.41■□□□□ 0.06
PHC1-208ENST00000540574 CCER1Q8TC90 406 aaPredicted RBP15.36■□□□□ 0.05
PHC1-208ENST00000540574 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.28■□□□□ 0.04
PHC1-208ENST00000540574 RSF1Q96T23 1441 aaPredicted RBP15.25■□□□□ 0.03
PHC1-208ENST00000540574 APLP2Q06481 763 aa15.2■□□□□ 0.02
PHC1-208ENST00000540574 ZEB1P37275 1124 aaPredicted RBP15.17■□□□□ 0.02
PHC1-208ENST00000540574 CECR2Q9BXF3 1484 aa15.15■□□□□ 0.02
PHC1-208ENST00000540574 HNRNPUL2Q1KMD3 747 aaKnown RBP15.1■□□□□ 0.01
PHC1-208ENST00000540574 DCAF1Q9Y4B6 1507 aa15.08■□□□□ 0
PHC1-208ENST00000540574 RB1CC1Q8TDY2 1594 aa15.03■□□□□ -0
PHC1-208ENST00000540574 YTHDC1Q96MU7 727 aaKnown RBP15.02□□□□□ -0.01
PHC1-208ENST00000540574 ATP1B4Q9UN42 357 aaPredicted RBP15.02□□□□□ -0.01
PHC1-208ENST00000540574 ITGAEP38570 1179 aa14.96□□□□□ -0.01
PHC1-208ENST00000540574 MROH2BQ7Z745 1585 aa14.93□□□□□ -0.02
PHC1-208ENST00000540574 CSRNP3Q8WYN3 585 aa14.91□□□□□ -0.02
PHC1-208ENST00000540574 NACADO15069 1562 aa14.82□□□□□ -0.04
PHC1-208ENST00000540574 WIZO95785 1651 aa14.81□□□□□ -0.04
PHC1-208ENST00000540574 DIEXFQ68CQ4 756 aaKnown RBP14.8□□□□□ -0.04
PHC1-208ENST00000540574 ABCC8Q09428 1581 aa14.75□□□□□ -0.05
PHC1-208ENST00000540574 CENPBP07199 599 aaPredicted RBP14.75□□□□□ -0.05
PHC1-208ENST00000540574 SOGA1O94964 1423 aa14.72□□□□□ -0.05
PHC1-208ENST00000540574 CCDC88BA6NC98 1476 aa14.68□□□□□ -0.06
PHC1-208ENST00000540574 P3H3Q8IVL6 736 aa14.66□□□□□ -0.06
PHC1-208ENST00000540574 BAZ1AQ9NRL2 1556 aaPredicted RBP14.65□□□□□ -0.06
PHC1-208ENST00000540574 CEP162Q5TB80 1403 aa14.64□□□□□ -0.07
PHC1-208ENST00000540574 GTF3C3Q9Y5Q9 886 aa14.57□□□□□ -0.08
PHC1-208ENST00000540574 RUSC2Q8N2Y8 1516 aa14.57□□□□□ -0.08
PHC1-208ENST00000540574 WRNQ14191 1432 aaPredicted RBP eCLIP14.56□□□□□ -0.08
PHC1-208ENST00000540574 SCAF1Q9H7N4 1312 aaKnown RBP14.55□□□□□ -0.08
PHC1-208ENST00000540574 FAM50AQ14320 339 aaKnown RBP14.54□□□□□ -0.08
PHC1-208ENST00000540574 ZNF316A6NFI3 1004 aaPredicted RBP14.53□□□□□ -0.08
PHC1-208ENST00000540574 NEUROD1Q13562 356 aa14.53□□□□□ -0.08
PHC1-208ENST00000540574 CLIP1P30622 1438 aa14.49□□□□□ -0.09
PHC1-208ENST00000540574 ACIN1Q9UKV3 1341 aaKnown RBP14.47□□□□□ -0.09
PHC1-208ENST00000540574 TNIKQ9UKE5 1360 aa14.46□□□□□ -0.09
PHC1-208ENST00000540574 ARID3CA6NKF2 412 aa14.46□□□□□ -0.09
PHC1-208ENST00000540574 BAZ1BQ9UIG0 1483 aaKnown RBP14.45□□□□□ -0.1
PHC1-208ENST00000540574 GOLGA3Q08378 1498 aa14.43□□□□□ -0.1
PHC1-208ENST00000540574 TOP2AP11388 1531 aaKnown RBP14.41□□□□□ -0.1
PHC1-208ENST00000540574 CNGB1Q14028 1251 aaPredicted RBP14.41□□□□□ -0.1
PHC1-208ENST00000540574 SMARCA4P51532 1647 aa14.41□□□□□ -0.1
PHC1-208ENST00000540574 MIER1Q8N108 512 aa14.4□□□□□ -0.11
PHC1-208ENST00000540574 SMARCA2P51531 1590 aa14.33□□□□□ -0.11
PHC1-208ENST00000540574 EEA1Q15075 1411 aa14.33□□□□□ -0.12
PHC1-208ENST00000540574 HIRIP3Q9BW71 556 aaPredicted RBP14.33□□□□□ -0.12
PHC1-208ENST00000540574 KANK4Q5T7N3 995 aaPredicted RBP14.32□□□□□ -0.12
PHC1-208ENST00000540574 CEP164Q9UPV0 1460 aa14.31□□□□□ -0.12
PHC1-208ENST00000540574 RAPGEF2Q9Y4G8 1499 aa14.27□□□□□ -0.13
PHC1-208ENST00000540574 BCANQ96GW7 911 aa14.26□□□□□ -0.13
PHC1-208ENST00000540574 ATAD2BQ9ULI0 1458 aa14.26□□□□□ -0.13
PHC1-208ENST00000540574 POLR3GLQ9BT43 218 aa14.25□□□□□ -0.13
PHC1-208ENST00000540574 PELP1Q8IZL8 1130 aaKnown RBP14.23□□□□□ -0.13
PHC1-208ENST00000540574 TRIM52Q96A61 297 aa14.21□□□□□ -0.13
PHC1-208ENST00000540574 DDX10Q13206 875 aaKnown RBP14.19□□□□□ -0.14
PHC1-208ENST00000540574 FBLN2P98095 1184 aa14.18□□□□□ -0.14
PHC1-208ENST00000540574 VPS8Q8N3P4 1428 aa14.18□□□□□ -0.14
PHC1-208ENST00000540574 CHIC2Q9UKJ5 165 aa14.17□□□□□ -0.14
PHC1-208ENST00000540574 KIF27Q86VH2 1401 aa14.16□□□□□ -0.14
PHC1-208ENST00000540574 SIN3AQ96ST3 1273 aa14.16□□□□□ -0.14
PHC1-208ENST00000540574 CUX2O14529 1486 aa14.12□□□□□ -0.15
PHC1-208ENST00000540574 SYNJ1O43426 1573 aa14.12□□□□□ -0.15
PHC1-208ENST00000540574 NEFLP07196 543 aa14.1□□□□□ -0.15
PHC1-208ENST00000540574 ZNF326Q5BKZ1 582 aaKnown RBP14.08□□□□□ -0.16
PHC1-208ENST00000540574 BICRAQ9NZM4 1560 aa14.06□□□□□ -0.16
PHC1-208ENST00000540574 CARMIL1Q5VZK9 1371 aa14.05□□□□□ -0.16
PHC1-208ENST00000540574 UNC13AQ9UPW8 1703 aa14.05□□□□□ -0.16
PHC1-208ENST00000540574 RRP7BPQ9NSQ0 103 aa14.04□□□□□ -0.16
PHC1-208ENST00000540574 ZNF777Q9ULD5 760 aaPredicted RBP14.04□□□□□ -0.16
PHC1-208ENST00000540574 CCNB3Q8WWL7 1395 aa14.03□□□□□ -0.16
PHC1-208ENST00000540574 MTUS2Q5JR59 1369 aa14□□□□□ -0.17
PHC1-208ENST00000540574 ANP32CO43423 234 aa14□□□□□ -0.17
PHC1-208ENST00000540574 TDRD9Q8NDG6 1382 aaKnown RBP13.97□□□□□ -0.17
PHC1-208ENST00000540574 SENP3-EIF4A1A0A087X0R7 540 aa13.97□□□□□ -0.17
PHC1-208ENST00000540574 KCNH8Q96L42 1107 aa13.97□□□□□ -0.17
PHC1-208ENST00000540574 TONSLQ96HA7 1378 aa13.96□□□□□ -0.17
PHC1-208ENST00000540574 KIF21BO75037 1637 aa13.95□□□□□ -0.18
PHC1-208ENST00000540574 FKBP8Q14318 412 aa13.93□□□□□ -0.18
PHC1-208ENST00000540574 RAB3GAP2Q9H2M9 1393 aa13.93□□□□□ -0.18
PHC1-208ENST00000540574 DHX57Q6P158 1386 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms