Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.65■□□□□ 0.9
TRAV39A0A0B4J263 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV39A0A0B4J263 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV39A0A0B4J263 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV39A0A0B4J263 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TRAV39A0A0B4J263 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TRAV39A0A0B4J263 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.65■□□□□ 0.9
TRAV39A0A0B4J263 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.65■□□□□ 0.9
TRAV39A0A0B4J263 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
TRAV39A0A0B4J263 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV39A0A0B4J263 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.64■□□□□ 0.89
TRAV39A0A0B4J263 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.64■□□□□ 0.89
TRAV39A0A0B4J263 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
TRAV39A0A0B4J263 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAV39A0A0B4J263 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.63■□□□□ 0.89
TRAV39A0A0B4J263 WHAMMP3-201ENST00000611636 1609 ntBASIC20.63■□□□□ 0.89
TRAV39A0A0B4J263 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TRAV39A0A0B4J263 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
TRAV39A0A0B4J263 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TRAV39A0A0B4J263 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.62■□□□□ 0.89
TRAV39A0A0B4J263 AC091060.1-201ENST00000623524 1766 ntBASIC20.62■□□□□ 0.89
TRAV39A0A0B4J263 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV39A0A0B4J263 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.61■□□□□ 0.89
TRAV39A0A0B4J263 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV39A0A0B4J263 ABHD17AP4-201ENST00000411545 909 ntBASIC20.61■□□□□ 0.89
TRAV39A0A0B4J263 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV39A0A0B4J263 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV39A0A0B4J263 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV39A0A0B4J263 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
TRAV39A0A0B4J263 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.6■□□□□ 0.89
TRAV39A0A0B4J263 AC135731.1-201ENST00000569415 2548 ntBASIC20.6■□□□□ 0.89
TRAV39A0A0B4J263 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRAV39A0A0B4J263 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRAV39A0A0B4J263 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRAV39A0A0B4J263 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV39A0A0B4J263 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV39A0A0B4J263 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.58■□□□□ 0.89
TRAV39A0A0B4J263 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV39A0A0B4J263 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.58■□□□□ 0.89
TRAV39A0A0B4J263 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.58■□□□□ 0.89
TRAV39A0A0B4J263 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
TRAV39A0A0B4J263 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
TRAV39A0A0B4J263 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
TRAV39A0A0B4J263 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV39A0A0B4J263 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV39A0A0B4J263 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.56■□□□□ 0.88
TRAV39A0A0B4J263 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV39A0A0B4J263 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV39A0A0B4J263 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
TRAV39A0A0B4J263 HLA-V-202ENST00000446817 847 ntBASIC20.55■□□□□ 0.88
TRAV39A0A0B4J263 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV39A0A0B4J263 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV39A0A0B4J263 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.55■□□□□ 0.88
TRAV39A0A0B4J263 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAV39A0A0B4J263 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV39A0A0B4J263 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV39A0A0B4J263 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV39A0A0B4J263 MIR219A2-201ENST00000608502 1504 ntBASIC20.53■□□□□ 0.88
TRAV39A0A0B4J263 AC142472.1-201ENST00000612013 1741 ntBASIC20.53■□□□□ 0.88
TRAV39A0A0B4J263 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.53■□□□□ 0.88
TRAV39A0A0B4J263 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV39A0A0B4J263 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV39A0A0B4J263 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV39A0A0B4J263 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV39A0A0B4J263 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV39A0A0B4J263 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV39A0A0B4J263 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV39A0A0B4J263 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAV39A0A0B4J263 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV39A0A0B4J263 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV39A0A0B4J263 CR559946.2-201ENST00000623684 991 ntBASIC20.52■□□□□ 0.88
TRAV39A0A0B4J263 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
TRAV39A0A0B4J263 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV39A0A0B4J263 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.51■□□□□ 0.87
TRAV39A0A0B4J263 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV39A0A0B4J263 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV39A0A0B4J263 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV39A0A0B4J263 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.5■□□□□ 0.87
TRAV39A0A0B4J263 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.5■□□□□ 0.87
TRAV39A0A0B4J263 AC008813.1-201ENST00000536597 885 ntBASIC20.5■□□□□ 0.87
TRAV39A0A0B4J263 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
TRAV39A0A0B4J263 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV39A0A0B4J263 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.5■□□□□ 0.87
TRAV39A0A0B4J263 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV39A0A0B4J263 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV39A0A0B4J263 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV39A0A0B4J263 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV39A0A0B4J263 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV39A0A0B4J263 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV39A0A0B4J263 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV39A0A0B4J263 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.49■□□□□ 0.87
TRAV39A0A0B4J263 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV39A0A0B4J263 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV39A0A0B4J263 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV39A0A0B4J263 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV39A0A0B4J263 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV39A0A0B4J263 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.48■□□□□ 0.87
TRAV39A0A0B4J263 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.48■□□□□ 0.87
TRAV39A0A0B4J263 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.48■□□□□ 0.87
TRAV39A0A0B4J263 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms