Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV1-2A0A0B4J238 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV1-2A0A0B4J238 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV1-2A0A0B4J238 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
TRAV1-2A0A0B4J238 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV1-2A0A0B4J238 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV1-2A0A0B4J238 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV1-2A0A0B4J238 MIR762-201ENST00000390236 83 ntBASIC21.51■■□□□ 1.03
TRAV1-2A0A0B4J238 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV1-2A0A0B4J238 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV1-2A0A0B4J238 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV1-2A0A0B4J238 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV1-2A0A0B4J238 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV1-2A0A0B4J238 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV1-2A0A0B4J238 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV1-2A0A0B4J238 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV1-2A0A0B4J238 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV1-2A0A0B4J238 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV1-2A0A0B4J238 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV1-2A0A0B4J238 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
TRAV1-2A0A0B4J238 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAV1-2A0A0B4J238 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
TRAV1-2A0A0B4J238 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
TRAV1-2A0A0B4J238 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV1-2A0A0B4J238 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV1-2A0A0B4J238 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.47■■□□□ 1.03
TRAV1-2A0A0B4J238 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV1-2A0A0B4J238 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV1-2A0A0B4J238 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV1-2A0A0B4J238 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV1-2A0A0B4J238 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.46■■□□□ 1.03
TRAV1-2A0A0B4J238 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.46■■□□□ 1.03
TRAV1-2A0A0B4J238 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.45■■□□□ 1.03
TRAV1-2A0A0B4J238 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.45■■□□□ 1.02
TRAV1-2A0A0B4J238 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV1-2A0A0B4J238 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV1-2A0A0B4J238 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.45■■□□□ 1.02
TRAV1-2A0A0B4J238 AC136428.2-201ENST00000563187 214 ntBASIC21.45■■□□□ 1.02
TRAV1-2A0A0B4J238 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.45■■□□□ 1.02
TRAV1-2A0A0B4J238 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.45■■□□□ 1.02
TRAV1-2A0A0B4J238 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV1-2A0A0B4J238 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV1-2A0A0B4J238 AC142381.3-201ENST00000568208 1670 ntBASIC21.44■■□□□ 1.02
TRAV1-2A0A0B4J238 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV1-2A0A0B4J238 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.44■■□□□ 1.02
TRAV1-2A0A0B4J238 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.44■■□□□ 1.02
TRAV1-2A0A0B4J238 AC108673.1-201ENST00000510422 1159 ntBASIC21.44■■□□□ 1.02
TRAV1-2A0A0B4J238 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
TRAV1-2A0A0B4J238 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV1-2A0A0B4J238 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRAV1-2A0A0B4J238 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
TRAV1-2A0A0B4J238 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
TRAV1-2A0A0B4J238 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV1-2A0A0B4J238 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV1-2A0A0B4J238 AC010501.1-201ENST00000606270 1962 ntBASIC21.43■■□□□ 1.02
TRAV1-2A0A0B4J238 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV1-2A0A0B4J238 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.43■■□□□ 1.02
TRAV1-2A0A0B4J238 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
TRAV1-2A0A0B4J238 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV1-2A0A0B4J238 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV1-2A0A0B4J238 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
TRAV1-2A0A0B4J238 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV1-2A0A0B4J238 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV1-2A0A0B4J238 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV1-2A0A0B4J238 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.41■■□□□ 1.02
TRAV1-2A0A0B4J238 WHAMMP3-201ENST00000611636 1609 ntBASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV1-2A0A0B4J238 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.02
TRAV1-2A0A0B4J238 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TRAV1-2A0A0B4J238 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRAV1-2A0A0B4J238 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAV1-2A0A0B4J238 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.39■■□□□ 1.01
TRAV1-2A0A0B4J238 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRAV1-2A0A0B4J238 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRAV1-2A0A0B4J238 AC097358.2-201ENST00000607541 1159 ntBASIC21.38■■□□□ 1.01
TRAV1-2A0A0B4J238 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV1-2A0A0B4J238 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV1-2A0A0B4J238 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.36■■□□□ 1.01
TRAV1-2A0A0B4J238 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV1-2A0A0B4J238 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
TRAV1-2A0A0B4J238 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
TRAV1-2A0A0B4J238 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV1-2A0A0B4J238 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
TRAV1-2A0A0B4J238 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
TRAV1-2A0A0B4J238 MIR6090-201ENST00000622481 60 ntBASIC21.35■■□□□ 1.01
TRAV1-2A0A0B4J238 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRAV1-2A0A0B4J238 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRAV1-2A0A0B4J238 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.35■■□□□ 1.01
TRAV1-2A0A0B4J238 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV1-2A0A0B4J238 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV1-2A0A0B4J238 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV1-2A0A0B4J238 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms