Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS28Q9UK41 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS28Q9UK41 GMCL1P1-201ENST00000463439 1581 ntBASIC18.64■□□□□ 0.57
VPS28Q9UK41 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS28Q9UK41 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 CHCHD2P8-201ENST00000429873 447 ntBASIC18.63■□□□□ 0.57
VPS28Q9UK41 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
VPS28Q9UK41 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.63■□□□□ 0.57
VPS28Q9UK41 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VPS28Q9UK41 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS28Q9UK41 AL353692.3-201ENST00000407031 1396 ntBASIC18.63■□□□□ 0.57
VPS28Q9UK41 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS28Q9UK41 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.63■□□□□ 0.57
VPS28Q9UK41 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS28Q9UK41 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VPS28Q9UK41 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS28Q9UK41 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VPS28Q9UK41 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS28Q9UK41 ATP5G2P1-201ENST00000433580 426 ntBASIC18.62■□□□□ 0.57
VPS28Q9UK41 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS28Q9UK41 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VPS28Q9UK41 AC092119.3-201ENST00000612618 583 ntBASIC18.62■□□□□ 0.57
VPS28Q9UK41 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS28Q9UK41 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 LINC01126-201ENST00000623515 1646 ntBASIC18.62■□□□□ 0.57
VPS28Q9UK41 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VPS28Q9UK41 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.62■□□□□ 0.57
VPS28Q9UK41 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS28Q9UK41 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS28Q9UK41 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS28Q9UK41 NPAP1P7-201ENST00000613027 823 ntBASIC18.61■□□□□ 0.57
VPS28Q9UK41 AC004263.2-201ENST00000617183 678 ntBASIC18.61■□□□□ 0.57
VPS28Q9UK41 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS28Q9UK41 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS28Q9UK41 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS28Q9UK41 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS28Q9UK41 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS28Q9UK41 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS28Q9UK41 PCDHB18P-201ENST00000524813 2368 ntBASIC18.6■□□□□ 0.57
VPS28Q9UK41 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
VPS28Q9UK41 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS28Q9UK41 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS28Q9UK41 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS28Q9UK41 KRT18P1-202ENST00000452408 1331 ntBASIC18.6■□□□□ 0.57
VPS28Q9UK41 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms