Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 MIR1238-201ENST00000408483 83 ntBASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 AC108860.2-201ENST00000562760 2183 ntBASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 AL499627.1-201ENST00000569373 2188 ntBASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC39Q9UFE4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 AL390955.1-201ENST00000428694 934 ntBASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 CCR12P-201ENST00000446203 998 ntBASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 TSPY17P-201ENST00000450329 467 ntBASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 AC138028.4-201ENST00000564984 1845 ntBASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC39Q9UFE4 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 MIR564-202ENST00000385049 94 ntBASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC39Q9UFE4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC39Q9UFE4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms