Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SNORA78-201ENST00000459373 127 ntBASIC15.84■□□□□ 0.13
NKX3-1Q99801 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 Z99916.2-201ENST00000604037 246 ntBASIC15.84■□□□□ 0.13
NKX3-1Q99801 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 KRT8P50-201ENST00000562022 1438 ntBASIC15.84■□□□□ 0.13
NKX3-1Q99801 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NKX3-1Q99801 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NKX3-1Q99801 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.83■□□□□ 0.13
NKX3-1Q99801 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
NKX3-1Q99801 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NKX3-1Q99801 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
NKX3-1Q99801 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NKX3-1Q99801 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
NKX3-1Q99801 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 BUB3-202ENST00000368859 667 ntTSL 3 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 AC073195.1-201ENST00000607241 877 ntBASIC15.83■□□□□ 0.12
NKX3-1Q99801 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 AC108860.2-201ENST00000562760 2183 ntBASIC15.83■□□□□ 0.12
NKX3-1Q99801 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 UROS-202ENST00000368778 1556 ntTSL 2 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC15.83■□□□□ 0.12
NKX3-1Q99801 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
NKX3-1Q99801 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 MDFI-202ENST00000373050 809 ntTSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 MIR564-202ENST00000385049 94 ntBASIC15.82■□□□□ 0.12
NKX3-1Q99801 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 AC026271.3-201ENST00000571884 352 ntBASIC15.82■□□□□ 0.12
NKX3-1Q99801 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 GMCL1P1-201ENST00000463439 1581 ntBASIC15.82■□□□□ 0.12
NKX3-1Q99801 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 AC020916.1-201ENST00000587762 1774 ntBASIC15.82■□□□□ 0.12
NKX3-1Q99801 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NKX3-1Q99801 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
NKX3-1Q99801 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms