Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 AL121672.3-201ENST00000608644 468 ntBASIC17.98■□□□□ 0.47
VPS35Q96QK1 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
VPS35Q96QK1 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS35Q96QK1 LINC00167-201ENST00000530583 1419 ntBASIC17.98■□□□□ 0.47
VPS35Q96QK1 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
VPS35Q96QK1 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.97■□□□□ 0.47
VPS35Q96QK1 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS35Q96QK1 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
VPS35Q96QK1 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS35Q96QK1 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
VPS35Q96QK1 AC135776.1-201ENST00000319817 2481 ntBASIC17.97■□□□□ 0.47
VPS35Q96QK1 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.97■□□□□ 0.47
VPS35Q96QK1 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS35Q96QK1 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS35Q96QK1 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 AC104581.1-202ENST00000635932 2618 ntBASIC17.96■□□□□ 0.47
VPS35Q96QK1 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 BX276092.5-203ENST00000456199 560 ntBASIC17.96■□□□□ 0.47
VPS35Q96QK1 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.96■□□□□ 0.47
VPS35Q96QK1 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS35Q96QK1 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS35Q96QK1 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.96■□□□□ 0.46
VPS35Q96QK1 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
VPS35Q96QK1 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
VPS35Q96QK1 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
VPS35Q96QK1 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VPS35Q96QK1 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS35Q96QK1 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms