Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPRD1AQ96P16 LINC00167-201ENST00000530583 1419 ntBASIC18.66■□□□□ 0.58
RPRD1AQ96P16 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RPRD1AQ96P16 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.64■□□□□ 0.58
RPRD1AQ96P16 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RPRD1AQ96P16 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
RPRD1AQ96P16 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
RPRD1AQ96P16 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.58
RPRD1AQ96P16 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RPRD1AQ96P16 AL096828.2-201ENST00000567259 1965 ntBASIC18.64■□□□□ 0.58
RPRD1AQ96P16 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
RPRD1AQ96P16 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.64■□□□□ 0.58
RPRD1AQ96P16 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 AC092329.2-201ENST00000598402 547 ntBASIC18.64■□□□□ 0.57
RPRD1AQ96P16 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.64■□□□□ 0.57
RPRD1AQ96P16 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 AC093010.1-201ENST00000473625 1624 ntBASIC18.63■□□□□ 0.57
RPRD1AQ96P16 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.63■□□□□ 0.57
RPRD1AQ96P16 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPRD1AQ96P16 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms